Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq716 179 5e-40 seq257 143 3e-29 seq168 143 3e-29 seq2 114 2e-20 seq272 89.7 6e-13 >seq1 Length=1764766 Score = 183 bits (202), Expect = 4e-41 Identities = 247/344 (72%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| ||||| || || ||| | || ||||| || ||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| ||||| | |||||||| ||| | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||| | || || ||||| |||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||| || | | ||||| || |||||||| || ||||| | ||| ||||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || || ||| | ||||| |||||||| | ||||| || |||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||||| |||| ||||| || || | | | || |||||||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 179 bits (198), Expect = 5e-40 Identities = 207/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 183657 TGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCA 183716 ||||||||| || || ||| | | || || |||| |||| |||| || ||||| ||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 183717 CAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCT 183776 | | ||||| |||||||| || | ||| | ||||| |||||||| ||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 183777 GTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTC 183836 |||||||| || || ||||| |||| || || || | | ||||||| || Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 183837 TGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGC 183896 ||| || || | ||||||| ||||||||||| ||||| ||||| || ||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 183897 TGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGC 183935 |||||||| || ||||| || |||||||||| ||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 143 bits (158), Expect = 3e-29 Identities = 244/352 (69%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 186342 AATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCT 186401 ||||| || || || || | ||| || | ||| |||||| ||||||||| || || || Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 186402 CTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTC 186461 || |||| |||||||| || ||| ||||| || ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 186462 CTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTA 186521 | | || ||||||| || | || ||||| ||||| |||| ||||||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 186522 GC--AGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATA 186579 || |||||| | |||| |||| |||| | || || |||| ||| ||||||||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 186580 CTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAG 186639 | | | |||||||| || | ||| |||||| | || | | || ||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 186640 AAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGG 186691 || |||| ||||| ||||| || || ||| | || ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 143 bits (158), Expect = 3e-29 Identities = 152/199 (76%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 183985 GTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGT 184044 || || || || ||||||||| || | ||| |||||| ||||| |||||| | |||||| Sbjct 245235 GTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGT 245293 Query 184045 TTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGAC 184104 ||||| ||||| || | | ||||| || |||||||||| | || |||| || | Sbjct 245294 TTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAAT 245353 Query 184105 GTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTC 184164 | | ||||||||| |||||| |||||||| ||||| || ||||||||||| |||||| Sbjct 245354 ATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 245413 Query 184165 CCTCTCGACCTTGCTGCTG 184183 |||| ||||| || |||| Sbjct 245414 TCTCTAGACCTAGCGGCTG 245432 >seq2 Length=1456787 Score = 114 bits (126), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 183873 AGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTA 183932 |||||| ||||| || ||||| ||||||||||| || ||||| || |||| ||||| || Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 183933 TGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGG 183992 |||| |||| |||||||| | ||||||||| | ||||||||||| || || || Sbjct 1455466 TGCTA-GTTTC------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 183993 CATCTGGTTTACTGCTCTTGGT 184014 || |||||||| ||| ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 >seq272 Length=206342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/264 (68%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 186354 TTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCC 186413 || || | ||| || | ||| |||| | ||||||| | || || || | | ||||| Sbjct 146893 TTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC- 146835 Query 186414 TCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATT---CCTGTTGTTC 186470 ||||| || | ||| ||| | || | ||| || || |||| ||| || ||| Sbjct 146834 ---TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTC 146778 Query 186471 CTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATC 186530 | |||| || || || |||| || || ||||| ||||||||||| || || || | Sbjct 146777 C---AAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT- 146722 Query 186531 CTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAA 186590 || ||| ||| ||||| | || |||||||| | || ||||| |||||| | | |||| Sbjct 146721 ATTAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAA 146662 Query 186591 GATGGCGAACAAGCAAACACATTC 186614 ||||| || | ||| |||||| Sbjct 146661 GATGGTGATGGTGTAAATACATTC 146638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621852714239400