Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1 196 5e-45 seq716 185 1e-41 seq272 145 9e-30 seq257 143 3e-29 seq168 123 3e-23 seq1194 111 2e-19 seq2 95.1 1e-14 seq269 87.8 2e-12 seq139 86.0 7e-12 >seq1 Length=1764766 Score = 196 bits (216), Expect = 5e-45 Identities = 252/348 (72%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| ||||| || |||||||| || ||||| || || ||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 || ||||||| |||||| ||||| | || ||||||||| | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||| ||| || |||| | | ||||| || | ||||| ||||| ||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 || || ||||| || || | || || || ||||| || ||||| || | ||| || ||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 166062 AACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAG 166121 || || ||| | || || || | ||||| ||| |||| || ||| || |||||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 166122 AACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||| | |||||||| || || | | | || ||||| |||||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq716 Length=92840 Score = 185 bits (204), Expect = 1e-41 Identities = 206/275 (75%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 164393 ATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAAC 164452 |||||||| || |||||| | || ||||||| ||| | || || || ||||||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 164453 ATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 164512 ||||| |||||||| || | |||| | || ||||| ||||| || ||||| || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 164513 AGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAG 164572 ||||| || || ||||| |||| || ||| || | | | ||||| |||||||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 164573 TCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCT 164632 || || | ||||||| || ||||| || ||||||||||| || || || |||||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 164633 CACGGTTACTTTGGTCGTCTGATTTTCCAATACGC 164667 || ||||| ||||| || |||| |||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq272 Length=206342 Score = 145 bits (160), Expect = 9e-30 Identities = 350/518 (68%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 165284 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCA---AACTTTCTTA-CTGCG 165338 ||||||||| ||| | || ||||||||| | || || | | ||||| |||| ||| Sbjct 147162 GTATACTCATGGATTAGCAAGTTCCTATTTGGAAGGATATATGTAACTT-CTTAGCTGTC 147104 Query 165339 GCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAG 165398 | |||||||||| | | | | | |||||| | || | ||||||| |||||| Sbjct 147103 ATAATTTCTACTCCCGTTAATAGTTTAGCACATTCTTTAATGTTACTATGGGATCCTGAA 147044 Query 165399 TCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTC 165458 | ||| | || || | || ||||| ||| | | || || ||||||||||| | || Sbjct 147043 GCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGGACTTTTGTTGTTCTT 146984 Query 165459 CACGGAGCCTTTGCA--CTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTT 165515 || || | ||| || || |||||||| | | || || |||||||| || ||| || Sbjct 146983 CATGG--CATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAACTTGCTCGATCTG 146926 Query 165516 ATCGGTATTCGTCCTTACAATGCTATTG---CTTTCTCTGGTCCTATTGCTGTATTCGTT 165572 || | | |||||| ||| ||| | ||||| | ||| |||| ||| || | | Sbjct 146925 TTCAATTGTA-TCCTTATAATATTATAATCACATTCTCCGCTCCAATTGTTGTTTTTGGT 146867 Query 165573 AGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGG 165632 ||| || | || ||||| | | || || ||||| || |||| || | Sbjct 146866 TCTGTATTCTTGATTTATCCGTTAGTTCAGTC----TGGTTTTTTACACCCAGTTTTAGC 146811 Query 165633 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAAT 165692 || | ||| || || ||||| ||||| |||||||||| ||||| |||| | || Sbjct 146810 GTAGTAGCTATATTACGATTTACCCTCTTTTTCCAAGGGTTTCATAATTGGAAATTTAAC 146751 Query 165693 CCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCAT 165752 || |||||||||||||| || || || | ||| | | ||| |||| | ||| || ||| Sbjct 146750 CCATTTCACATGATGGGAGTTGCTGGGGTATTA-GTGTTGCACTGCTATGTGCTATCCAT 146692 Query 165753 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 165790 || | || ||||| |||||||| | |||||||||||| Sbjct 146691 GGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq257 Length=213233 Score = 143 bits (158), Expect = 3e-29 Identities = 244/352 (69%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 165534 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCT 165593 ||||| || || ||||| | ||| |||| ||| || ||| ||| || || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 165594 CTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 165653 || || | |||||||| ||||| || || || ||||| || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 165654 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTA 165713 | || || |||||||||| |||| ||||| |||| | |||||||||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 165714 GC--AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATA 165771 || ||||| || || | || |||| | ||| ||||||| ||| |||| |||| Sbjct 14305 GCCGAGGTA--TTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 165772 CTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAG 165831 | || | |||||||| ||| | ||| || ||| | ||| | ||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 165832 AGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGG 165883 | |||||||||| ||||| || |||||| | || ||||| || || ||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 123 bits (136), Expect = 3e-23 Identities = 148/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 164716 TGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGG 164775 ||| || ||||| ||||||||| || | || |||||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 164776 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGA 164835 ||| || ||||| || | | | ||| || | |||||||| | || |||| || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 164836 CGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTT 164895 | | ||||||||| ||| || |||||||| ||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 164896 CCCTCTCGACCTTGCTGCTG 164915 | |||| ||||| || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq1194 Length=46772 Score = 111 bits (122), Expect = 2e-19 Identities = 199/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 165183 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165242 ||||||||||||||||| | ||||| || || | || ||| ||| ||| | || Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 165243 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 165302 | || |||||| | | || | || || || || || |||||||| ||| | || Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 165303 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCT 165362 ||||||||| | || ||||| | ||||| | |||||| ||||| | | | Sbjct 21449 AGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAGT 21390 Query 165363 ATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGG 165422 | | || ||| | |||| ||| |||||||||| | ||||| || || | | ||| Sbjct 21389 TTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCATTGG 21330 Query 165423 TGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCA 165473 || ||| | || || || ||||||||||| || |||||||| || |||||| Sbjct 21329 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGCA 21279 >seq2 Length=1456787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/136 (75%), Gaps = 7/136 (5%) Strand=Plus/Plus Query 164605 AGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATA 164664 |||||||||||| || || || || ||||| ||||| ||||| || |||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 164665 CGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGG 164724 ||| ||| | ||||| | ||||||||| | || || |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 164725 TATCTGGTTTACTGCT 164740 ||| |||||||| ||| Sbjct 1455519 TATTTGGTTTACCGCT 1455534 >seq269 Length=207462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| | Sbjct 67645 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 67586 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATA--CTCACGGAC 165297 ||| | || |||||| | | || || || || || ||||||| |||| ||| Sbjct 67585 GCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGGTATACTCTCATGGAT 67526 Query 165298 TTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 165355 | || ||||||||| | | ||| ||| ||||| | |||| |||||||||||||| || Sbjct 67525 TAGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTGCCTGCCGCAGTTTCTACTCCCGC 67468 >seq139 Length=308073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| ||||||||||||||||||||| || || ||| |||||||| ||||||||| || Sbjct 89682 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGT 89741 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGC 164340 ||||| || |||||||| || || || Sbjct 89742 TGCATATTCAGCTCCTGTTGCAGCTGC 89768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557459255813400