Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq716 168 8e-37 seq257 147 3e-30 seq168 118 1e-21 seq272 96.9 4e-15 seq2 91.5 2e-13 seq1194 86.0 7e-12 seq269 82.4 9e-11 >seq1 Length=1764766 Score = 197 bits (218), Expect = 2e-45 Identities = 254/348 (73%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 179505 CCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATC 179564 || || |||| || || || ||||| |||||||| || ||||| || ||||| || ||| Sbjct 983303 CCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATC 983244 Query 179565 TTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTC 179624 ||||| | || || |||||| ||||| |||||||||||||||| ||||| || || Sbjct 983243 TTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 983184 Query 179625 ATGGGTCTTTGGACCTCTAGCATTGGTATTATT-GGTCTTGCACTTAACCTTAGAGCTTA 179683 | ||| | |||| | || || | | || | ||||| || | || || | || || Sbjct 983183 ACTGGTTTATGGATGAGT-GCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTA 983125 Query 179684 TGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATAC 179743 |||||| ||||| ||||| ||| | || || || |||||||| || ||||| | ||| || Sbjct 983124 TGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACAC 983065 Query 179744 CAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACA 179803 ||| || || || || || || ||| | |||||||||||||| | ||||| || || Sbjct 983064 CAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 983005 Query 179804 TGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||||||||| |||| ||||| || || | | | || |||||||| Sbjct 983004 TGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 168 bits (186), Expect = 8e-37 Identities = 203/276 (74%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 178062 TATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 178121 |||||| || || ||| | | || ||||||| ||| |||| || ||||| |||||| | Sbjct 34193 TATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTA 34134 Query 178122 CATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTT 178181 ||||| |||||||| || | ||||| || || |||||||| || || || || || || Sbjct 34133 TATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 34074 Query 178182 CAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGA 178241 |||||| || || ||||| |||| || || || | | ||||||| || || || Sbjct 34073 CAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGA 34014 Query 178242 AAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGC 178301 | | || | ||||||| ||||||||||| ||||| ||||| || || || || || Sbjct 34013 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGC 33954 Query 178302 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 178337 ||||||||| || || || ||||||||||||| || Sbjct 33953 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 147 bits (162), Expect = 3e-30 Identities = 245/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 179220 AATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCT 179279 ||||||||||| || || | |||||||| ||| ||||| ||||| || || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 179280 CTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTC 179339 || |||| ||||||||||| || ||||| || ||||| || || || ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 179340 CTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTA 179399 | || || | || || || | || ||||| | ||| | || ||||||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 179400 GC--AGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACA 179457 || |||||| |||| | || |||| ||||| ||||||| |||| |||| || | Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 179458 CACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAG 179517 | | |||||||| ||| |||||||||| | || | || || ||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 179518 AGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569 | | || ||||| |||||||| || ||| | || ||||| || |||||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 118 bits (130), Expect = 1e-21 Identities = 147/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 178386 TGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 178445 ||| || ||||| ||||| ||| || | ||| |||||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 178446 TTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGA 178505 ||| || ||||| || | | | |||||| | || || | || |||| || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 178506 CGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTT 178565 | | ||||||||| ||||||||||||||| ||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 178566 CCCTCTTGACCTCGCTGCTG 178585 | |||| ||||| || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq272 Length=206342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/443 (65%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 |||||| || | | ||||||| ||| ||||| || | ||||| || ||| || Sbjct 147074 ACATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCA 147015 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 | | | || || ||| ||||||| | || || || ||| || |||||||| | Sbjct 147014 AATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTAC 146955 Query 179174 GCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGC---AATCG 179229 | || || |||||| | || || ||| || | | |||||| ||| |||| Sbjct 146954 ATTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTA-TCCTTATAATATTATAATCA 146896 Query 179230 CGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGT 179289 | || || | |||||||| ||| |||| ||||| || | || ||||| | | |||| Sbjct 146895 CATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGT 146836 Query 179290 CCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCC 179349 | ||||| ||| | || ||| | || | ||| || || || || ||||| Sbjct 146835 C----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTT 146780 Query 179350 TACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCC 179409 | || || || || || |||| | ||||| || ||||||||||| || || || | Sbjct 146779 TCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT-A 146721 Query 179410 TGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAG 179469 | | | ||| |||| ||||| || ||||| |||| ||||| || || | ||||||| Sbjct 146720 TTAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAG 146661 Query 179470 ACAGTGACCAATCAAATACATTC 179492 | |||| |||||||||| Sbjct 146660 ATGGTGATGGTGTAAATACATTC 146638 >seq2 Length=1456787 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/142 (74%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 178275 AGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATA 178334 |||||| ||||| || || || |||||||||||||| || || || |||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 178335 CGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGG 178394 || ||| | ||||| | ||||||||| | || || |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 178395 TATCTGGTTCACTGCTCTTGGT 178416 ||| ||||| || ||| ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 >seq1194 Length=46772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 193/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 178869 GATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCA 178928 || || ||||||||||| | |||||| ||||| | || || | ||| || | | Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 178929 CTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCT 178988 | || |||||| ||| || | ||| || || || || || |||||||| || | || Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 178989 TCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCT 179048 ||| ||| | || || || ||| | ||||| | || || ||||| | | | | Sbjct 21449 AGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAGT 21390 Query 179049 CTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGG 179108 | | ||| || | | || ||| ||||||| ||||| || || ||||| | ||| Sbjct 21389 TTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCATTGG 21330 Query 179109 CTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGC 179158 ||| | || || || ||| ||||||| || ||||||||||| || || Sbjct 21329 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGC 21280 >seq269 Length=207462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 ||||| ||| | | | || || ||||||||||| |||||||| ||||| | || || Sbjct 67660 GATGATTGGTTATGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 67601 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 ||| ||| || | || | || |||||| || | || ||| || || || || ||| Sbjct 67600 CCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGG 67541 Query 178971 TATACTCAC-GGGATT-GCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTG 179028 ||||||| | ||||| || ||| ||| | || ||||| || ||| | |||| || | Sbjct 67540 TATACTCTCATGGATTAGCAAGTTCCTATTTGGAAGGATGCAACTTCTTGCCTGCCGCAG 67481 Query 179029 TATCAACTCCTGCT 179042 | || ||||| ||| Sbjct 67480 TTTCTACTCCCGCT 67467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596098529749200