Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1 217 2e-51 seq257 161 1e-34 seq716 156 5e-33 seq168 100 3e-16 seq272 96.9 4e-15 >seq1 Length=1764766 Score = 217 bits (240), Expect = 2e-51 Identities = 264/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 171254 ATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTC 171313 |||| || | ||||| | ||||| || ||||| ||||| || ||||| || || ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 171314 GCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGT 171373 || || ||||| | || || |||||| ||||||| |||||||||||| | ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 171374 TCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAG 171433 || || | ||| | ||| | ||| | | || | | ||||| ||| | ||||| | Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 171434 GGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTT 171493 || ||||| ||||| ||| || || | ||||| |||||||| || || ||||| | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 171494 CTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCA 171553 ||| ||||| || || || || || || ||| ||||||| |||||||| | ||| || Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 171554 ACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGATT 171613 || |||||||||||| | ||||| ||||| |||||| ||||||| || || |||| ||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAATT 982951 >seq257 Length=213233 Score = 161 bits (178), Expect = 1e-34 Identities = 248/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 170976 AATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCT 171035 ||||||||||| ||||| | ||| || | ||| ||||| || ||||| || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 171036 CTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTC 171095 || |||| |||||||||| ||||| ||||| || ||||| || || || ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 171096 CTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTT 171155 | || || | ||||| || | || |||||| |||| ||||||| |||||||| ||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 171156 GC--AGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATA 171213 || |||||| | || | ||| |||| | ||| ||||||| ||| |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 171214 CTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGG 171273 | || | |||||||| |||| | ||| || || | ||| || | ||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 171274 AAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGG 171325 || | || ||||| ||||| || ||||| | || ||||| || || ||||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq716 Length=92840 Score = 156 bits (172), Expect = 5e-33 Identities = 200/276 (72%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875 ||||||||| || ||||| | || || |||| ||| | || || |||||||||||| | Sbjct 34193 TATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTA 34134 Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935 ||||| |||||||| || | ||| | ||||| || || || || || || || || || Sbjct 34133 TATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 34074 Query 169936 TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGA 169995 || || || || ||| | | || || || ||| | | | ||||||| || || || Sbjct 34073 CAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGA 34014 Query 169996 GTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGC 170055 || || | ||||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 34013 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGC 33954 Query 170056 TCACGGTTACTTCGGTCGCCTGATCTTCCAATACGC 170091 ||| ||||| || || || ||||||||||||| || Sbjct 33953 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 100 bits (110), Expect = 3e-16 Identities = 143/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 170140 TGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGG 170199 ||| || || || ||||| || || | ||| | || ||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 170200 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGA 170259 ||| || ||||| || | | | ||| || | |||||||| | || |||| || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 170260 CGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTT 170319 | | ||||||||| |||||| |||||||| ||||| || ||||||||||| ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 170320 CCCTCTCGACCTCGCTGCTG 170339 | |||| ||||| || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq272 Length=206342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Minus Query 170981 AATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGG 171040 |||| | ||||| | ||| || | ||| |||| || ||| | || ||||| | | Sbjct 146900 AATCACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGT 146841 Query 171041 GCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCT 171100 ||||| ||||| || |||| ||| | || | ||| || || || || || Sbjct 146840 TCAGTC----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCT 146785 Query 171101 CTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGG 171160 ||| | ||||| || || || |||| | | || |||||||| |||||||| ||||| || Sbjct 146784 CTTTTTCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGG 146725 Query 171161 TATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTA 171220 | | | | |||| |||| | ||| || ||||| | || ||||| |||||||| | Sbjct 146724 GGTATTAGT-GTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATT 146666 Query 171221 TGAAGATGGTGAT 171233 ||||||||||||| Sbjct 146665 TGAAGATGGTGAT 146653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591991167572400