Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq53411 129 1e-24 seq95670 102 2e-16 seq104116 100 6e-16 seq102146 100 6e-16 seq59269 100 6e-16 seq111306 98.7 2e-15 seq99039 98.7 2e-15 seq63500 98.7 2e-15 seq58365 98.7 2e-15 seq55815 98.7 2e-15 seq21080 98.7 2e-15 seq27972 96.9 7e-15 seq40928 95.1 3e-14 seq115166 91.5 3e-13 seq103715 89.7 1e-12 seq65351 89.7 1e-12 seq58888 87.8 4e-12 >seq53411 Length=6979 Score = 129 bits (142), Expect = 1e-24 Identities = 342/510 (67%), Gaps = 17/510 (3%) Strand=Plus/Minus Query 230128 AACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC-CTGGTAAATCGTTTGCCGAGCGTCT 230186 || ||||| ||||||| | ||||||| | || || | | | | || || ||||| | Sbjct 3328 AAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAGA-CTTTCGCGGAGCGAAT 3270 Query 230187 CGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTG 230246 ||| |||| | || || ||||| || | || || || || |||||||| || ||||| Sbjct 3269 CGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTG 3210 Query 230247 GCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTC 230302 ||| || |||| | ||||||| || || | || |||||||| ||| | Sbjct 3209 GCT----AAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGC 3154 Query 230303 GCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCTCCAGAACAAG 230361 | || || || ||||| | |||| || || || | || || |||| || ||| Sbjct 3153 GAGATGAAGGCCTCCACTGCGACTTCG-CGTGCCTTCTCTACTCCCTCCTCCGGATGAAG 3095 Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAA-GCAGTTGAAAACGAAAAGGAGTT 230420 || | ||| || || |||| | | ||| || ||||| | || | |||||| Sbjct 3094 CTCACGGAGGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGACATAGAGAGGGAGTT 3036 Query 230421 CATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGT 230479 | | || ||||| | || || ||||||| |||| ||||||| ||| || ||||| |||| Sbjct 3035 CGTCTGCGACGCGTTACCGTG-CGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGT 2977 Query 230480 ACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACT 230539 ||||||| ||||| || || | | | | ||| | || || | ||| |||| | Sbjct 2976 ACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAGCTGTATGATG 2917 Query 230540 CTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCG 230599 ||||||| |||| | |||||||| ||| ||||| ||||||||||| ||||| | Sbjct 2916 TGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCAATTTCTTTG 2857 Query 230600 AAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 | ||| | || | || || ||| |||||| Sbjct 2856 AGAAGAGAGTTGGGGAGTACCAGAAGGCCT 2827 >seq95670 Length=1490 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 1414 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1473 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1474 GCCCCACGGTGGGC 1487 >seq104116 Length=7042 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 991 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 932 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 931 CCCCACGGTGGGC 919 >seq102146 Length=8691 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 4721 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4780 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4781 CCCCACGGTGGGC 4793 >seq59269 Length=15336 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 12799 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12858 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 12859 CCCCACGGTGGGC 12871 >seq111306 Length=12415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10499 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10558 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10559 CCCACGGTGGGC 10570 >seq99039 Length=4078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3865 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3806 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3805 CCCACGGTGGGC 3794 >seq63500 Length=4804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2229 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2288 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2289 CCCACGGTGGGC 2300 >seq58365 Length=5022 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1553 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1612 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1613 CCCACGGTGGGC 1624 >seq55815 Length=4020 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 419 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 360 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 359 CCCACGGTGGGC 348 >seq21080 Length=516 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 74 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14 CCCACGGTGGGC 3 >seq27972 Length=419 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 349 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 408 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 409 CCCACGGTGGG 419 >seq40928 Length=323 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| || || |||| || |||||||||||||||||||| Sbjct 323 CCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 264 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 263 CACGGTGGGC 254 >seq115166 Length=15877 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||| ||||||| Sbjct 8263 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCG 8204 Query 165767 AGCCCCACGATGGGC 165781 |||||| || ||||| Sbjct 8203 AGCCCCTCGGTGGGC 8189 >seq103715 Length=23558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 9122 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 9063 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 9062 CCCTCGGTGGGC 9051 >seq65351 Length=2577 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 2503 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 2562 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 2563 CCCTCGGTGGGC 2574 >seq58888 Length=1246 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGCC 60 Query 165771 CCACGATGGGC 165781 || || ||||| Sbjct 61 CCTCGGTGGGC 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056227114839860