Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq62381 104 2e-17 seq76293 98.7 8e-16 seq80270 89.7 4e-13 seq58370 89.7 4e-13 >seq62381 Length=5639 Score = 104 bits (114), Expect = 2e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||||| ||||| |||||||| ||||| ||| ||||| Sbjct 752 GACAAAGAAGGCATCCCTGTAGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 693 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| | |||| | | || |||||| || || ||||| || ||||||||| ||||||| Sbjct 692 GATGGTAGAACTCTTG-CGGTTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTT 635 >seq76293 Length=4593 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||| ||| || |||||||| | ||| ||| || Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || || || || || || || || |||| |||||||| Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||| || || ||||| || ||||| | || |||| || ||| Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 337 >seq80270 Length=12149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| || || |||||||||||||| || || || || || Sbjct 915 GACAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 974 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| | || |||| || |||||||| || |||||||||||||||||| ||||| Sbjct 975 GATGGCCGCACCCTGGCTGACTACAATATCCAAAAGGAATCTACTCTTCACCTGGTG 1031 >seq58370 Length=11695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| || || |||||||||||||| || || || || || Sbjct 2252 GACAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 2311 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| | || |||| || |||||||| || |||||||||||||||||| ||||| Sbjct 2312 GATGGCCGCACCCTGGCTGACTACAATATCCAAAAGGAATCTACTCTTCACCTGGTG 2368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427720928511410