Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq62381 113 4e-20 seq76293 93.3 3e-14 seq80270 89.7 4e-13 seq58370 89.7 4e-13 seq47958 86.0 5e-12 >seq62381 Length=5639 Score = 113 bits (124), Expect = 4e-20 Identities = 97/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||||| ||||| |||||||| ||||| ||||||||| Sbjct 752 GACAAAGAAGGCATCCCTGTAGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 693 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | |||| | | || |||||| || |||||||| || ||||||||| ||||||| Sbjct 692 GATGGTAGAACTCTTG-CGGTTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTT 635 >seq76293 Length=4593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||| ||| || |||||||| | ||| ||| || Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| || || || | || || || || |||| |||||||| Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| || || || ||||| || ||||| | || |||| || ||| Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 337 >seq80270 Length=12149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||| || || |||||||||||||| || || || | || Sbjct 915 GACAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 974 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| | || |||| || |||||||| ||||||||||||||||||||| ||||| Sbjct 975 GATGGCCGCACCCTGGCTGACTACAATATCCAAAAGGAATCTACTCTTCACCTGGTG 1031 >seq58370 Length=11695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||| || || |||||||||||||| || || || | || Sbjct 2252 GACAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 2311 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| | || |||| || |||||||| ||||||||||||||||||||| ||||| Sbjct 2312 GATGGCCGCACCCTGGCTGACTACAATATCCAAAAGGAATCTACTCTTCACCTGGTG 2368 >seq47958 Length=6020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||||| ||| | || ||||| || || ||||||||| Sbjct 5651 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 5592 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || |||||||| || |||||||| || ||||||||| | || ||| Sbjct 5591 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 5532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410206914024308