Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq80270 141 1e-28 seq58370 127 3e-24 seq76293 123 4e-23 seq28101 116 6e-21 seq115991 109 8e-19 seq67744 98.7 1e-15 seq66408 95.1 2e-14 seq87988 91.5 2e-13 seq47958 86.0 9e-12 >seq80270 Length=12149 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | ||||| |||||||| ||| | || | ||| || Sbjct 1277 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 1336 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || ||| ||||| || |||||||| || || || || | Sbjct 1337 A-GACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 1395 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | |||||| || | ||| | | |||||| | Sbjct 1396 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 1455 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || |||||| |||||||||| | ||| |||| ||||| || Sbjct 1456 ACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 1507 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| ||||| || | ||| ||||| | Sbjct 594 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 653 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| || || || || || || || || Sbjct 654 GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 713 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | |||||||| || || || | |||||| | || || | | || || ||| Sbjct 714 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTACAAT 773 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||||||| | || ||||| | | | || |||||||| Sbjct 774 ATTCAAAAGGAATCAACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTAT 823 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| | Sbjct 822 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 881 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || ||||| ||||||||||| ||||| || || Sbjct 882 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 941 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || | |||||| | || || | | || || ||| Sbjct 942 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 1001 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| ||| | || |||| Sbjct 1002 ATCCAAAAGGAATCTACTCTTCACCTGGT 1030 >seq58370 Length=11695 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| | Sbjct 2615 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 2674 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| |||||||| || || || ||||| || || || || Sbjct 2675 GACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 2734 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | |||||| | | ||| | | || |||||| Sbjct 2735 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 2794 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| ||||| | ||| | || |||||||| Sbjct 2795 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 2844 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | ||| |||| | Sbjct 2387 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAGAGTTCT 2446 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || || ||||| || || || || || || || || || Sbjct 2447 GATACAATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 2506 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| ||||| |||||||| |||| || | | |||||| || Sbjct 2507 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGATTACAAC 2566 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||||||| | || ||||| || ||| | || ||||| || Sbjct 2567 ATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCAT 2616 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 1931 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 1990 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||| ||||| || ||||| || || || ||||| Sbjct 1991 GACACCATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCCCCGGATCAG 2050 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | |||||||| || || || | |||||| | || || | | || || ||| Sbjct 2051 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGCACCCTTGCTGACTACAAT 2110 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | || ||||| | | | || |||||||| Sbjct 2111 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTAT 2160 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| | Sbjct 2159 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 2218 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || ||||| ||||||||||| ||||| || || Sbjct 2219 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 2278 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || | |||||| | || || | | || || ||| Sbjct 2279 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 2338 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| ||| | || |||| Sbjct 2339 ATCCAAAAGGAATCTACTCTTCACCTGGT 2367 >seq76293 Length=4593 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | || || ||||| || ||| | || | ||| || Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || || ||||| || |||||||| || || || || | Sbjct 169 A-GACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 227 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | ||||| | | ||| | | |||||| | Sbjct 228 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 287 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || ||| |||||||||| | ||| |||| ||||| || Sbjct 288 ACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 339 >seq28101 Length=418 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || || |||||||| || ||| | || | ||| ||| || ||| |||| | ||| Sbjct 417 CTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCTGACACCATTGATAATGTGAAA 358 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 |||||||| ||||| || ||||| || || || || || ||| | ||||||||||| Sbjct 357 GCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCAGGT 298 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 || || | |||||| | | ||| | | ||| |||||||||||||| || || ||| || Sbjct 297 AAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAATATTCAAAAGGAGTCCACTCTG 238 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| | ||| | || |||||||| Sbjct 237 CACTTGGTGCTTCGTCTGCGCGGTGGTAT 209 >seq115991 Length=9835 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||| | | || ||||| || || ||||| ||| | || ||| Sbjct 6252 ATGCAGATTTTTGTGAAGTCTTTGACTGGCAAGACCATCACTATGGAGGTGGAGAGCTC- 6310 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||||||||| || ||||| || || ||||| Sbjct 6311 TGATACCATTGACAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATCCCGCCGGATCA 6370 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| ||||| || || |||||| |||| || || | |||||||| Sbjct 6371 -----GGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 6425 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || || |||| | ||||| || | || |||||| Sbjct 6426 TATCCAGAAAGAGTCTACCCTGCACCTTGTTTTCAGTCTCCGTGGTGGT 6474 >seq67744 Length=10152 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 522 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 463 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| |||||||| ||||| || || || || || Sbjct 462 GACACCATTGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 403 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| ||||| || | ||| || | || || | | || || ||| Sbjct 402 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGAATGGACGCACCCTTGCTGACTACAAT 343 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | || |||| Sbjct 342 ATTCAAAAGGAATCGACTCTTCACCTGGT 314 >seq66408 Length=4853 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| || || || | ||| ||||| | Sbjct 867 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 808 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| || || || || || || || ||| Sbjct 807 GACACTATTGACAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAA 748 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | |||||| | || ||| | | || || || Sbjct 747 CAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACACTCGCTGACTACAAC 688 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 ||||| ||||| || ||| | || |||||| Sbjct 687 ATTCAGAAAGAGTCCACTCTCCACTTGGTT 658 >seq87988 Length=3988 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || || ||||| || || || |||||||| || || || | Sbjct 1751 TTCAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 1692 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 | || ||| ||||||| | | |||||||||||| |||||||| |||||| Sbjct 1691 TGGAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACT 1642 >seq47958 Length=6020 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 5656 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 5597 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | |||| | | |||||| || || ||||| || |||||| | || | | Sbjct 5596 TGGAAGATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAG 5537 Query 124747 TTTTA 124751 ||||| Sbjct 5536 TTTTA 5532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754343383289600