Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq47958 104 3e-17 seq57720 98.7 1e-15 seq87988 91.5 2e-13 seq67744 84.2 3e-11 seq58370 84.2 3e-11 >seq47958 Length=6020 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || ||||| || | || | ||| || || || || || |||||| Sbjct 5515 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 5574 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 5575 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 5634 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 5635 GGGATGCCTTCCTTATCCTG 5654 >seq57720 Length=9334 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| || || || ||||| ||||| | | Sbjct 7836 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 7777 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || ||||| || ||||| |||||||| || ||||||||||| || Sbjct 7776 AGGGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 7717 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 7716 ATCCCTTCCTTATCCTG 7700 >seq87988 Length=3988 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 1610 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 1669 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| ||| Sbjct 1670 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 1729 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 1730 GGGATGCCTTCCTTGTCCTG 1749 >seq67744 Length=10152 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| || | ||| ||||| ||| || ||||| || || | Sbjct 296 CCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 354 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | || || | || |||||||||||||||| ||||||||| || || || Sbjct 355 AAGGGTGCGTCCATTCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 414 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 415 AATGCCTTCCTTATCTTG 432 >seq58370 Length=11695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| || | ||| ||||| ||| || ||||| || || | Sbjct 2157 CCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 2099 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || || |||||||||||||| |||||||||||||| || Sbjct 2098 AAGGGTGCGCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTTTGCTGATCCGGGGG 2039 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 2038 GATGCCTTCCTTGTCTTG 2021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742431352906240