Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq62381 127 2e-24 seq66408 98.7 8e-16 seq76293 87.8 1e-12 seq80270 86.0 5e-12 seq47958 86.0 5e-12 seq67744 84.2 2e-11 >seq62381 Length=5639 Score = 127 bits (140), Expect = 2e-24 Identities = 170/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||| || | |||| |||||| || || || ||||| |||||||| || | Sbjct 619 TCCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCG-C 677 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| |||||||||||| ||||| ||| |||| ||||| |||||||| || || Sbjct 678 AAGAGTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGG 737 Query 18218 CACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | |||||| || || || || | | ||||| | | | || |||| | |||| Sbjct 738 GATGCCTTCTTTGTCCTGGGTCTTGGCT--TTGACATTGTCGATGGTATCACTGCTCTCG 795 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||||| | || ||||||| |||| || ||||||||||| || Sbjct 796 ACCTCAATAGTGATGGTCTTCCCGGTCAGAATTTTCACGAAAATTTGCATATT 848 >seq66408 Length=4853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| ||| || || || ||||| |||||||||||||| || Sbjct 641 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCG 700 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | || ||||| ||| |||| || |||||||| ||| ||| Sbjct 701 AGTGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 760 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||| ||||| | ||| ||||||| | || Sbjct 761 ATTCCCTCCTTGTCTTGGATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAAC 819 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | ||||| ||||| || ||||| Sbjct 820 CTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || |||| ||| | |||||||| ||||||||||||||||| || Sbjct 184 TCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGC 243 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 244 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 303 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 304 AATACCCTCCTTGTC 318 >seq76293 Length=4593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| || || || || ||||| ||||||||||| || ||| Sbjct 336 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 277 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | || || | || || || ||| |||| || || || || || ||| Sbjct 276 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 217 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || ||| | | |||||| | ||| ||||| | || | Sbjct 216 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 157 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| |||||||| || || ||||||||||||||| Sbjct 156 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 109 >seq80270 Length=12149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| || Sbjct 1277 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 1218 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 1217 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 1158 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCT--- 18273 | || ||||| || || | |||||| | | || ||| || ||| | ||| Sbjct 1157 AATACCCTCCTTGTCCTGGATCT-TTGCTTTAACATTGTCAATTGTATCA--GAGCTTTC 1101 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | | |||| ||||| | || || |||| || || ||||| ||||||||| Sbjct 1100 CACCTCCAAT-GTGATTGTCTTCCCAGTCAGGGTCTTCACAAAGATTTGCATT 1049 >seq47958 Length=6020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | || | |||||| ||||| || ||||| |||||||| || || Sbjct 5517 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 5576 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || | ||| |||||||| || Sbjct 5577 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGG 5636 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 5637 GATGCCTTCCTTATC 5651 >seq67744 Length=10152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| |||||| || ||||| |||||||| |||||||| || Sbjct 296 CCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCAGCA 355 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || || | || || || ||| | || |||||||| || || ||| Sbjct 356 AGGGTGCGTCCATTCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGA 415 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| |||| | || ||||| | ||| |||||| | || Sbjct 416 ATGCCTTCCTTATCTTGGATTT-TGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAAC 474 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || | || || || || || ||||| Sbjct 475 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378799278849390