Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq53411 217 1e-51 seq49026 125 6e-24 seq57720 113 4e-20 seq67744 104 2e-17 seq76293 102 7e-17 seq58370 98.7 9e-16 seq62381 93.3 4e-14 seq48708 93.3 4e-14 seq2078 87.8 2e-12 seq102053 86.0 6e-12 seq80270 86.0 6e-12 seq66408 84.2 2e-11 >seq53411 Length=6979 Score = 217 bits (240), Expect = 1e-51 Identities = 410/595 (69%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| |||||| | || || || || ||| | |||||||| ||||| || || ||||| Sbjct 3698 CATGTTCCCGATTCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTT 3639 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| ||| || || || || | || | | || | ||||| |||| || Sbjct 3638 CTGGACCGCCGAGGAGGTCGATCTCGAGCAAGACCAGCGCCACTGGGAAACCCT--AACC 3581 Query 57665 ATCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 | | ||||| | || || | ||||| | || || |||||||| ||||| || || Sbjct 3580 CCCGGCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATC 3521 Query 57723 GTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC 57782 || ||||||| | | || ||| || | || || || || |||||||| | | Sbjct 3520 GTCCTCGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCC 3461 Query 57783 TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATC 57842 || ||||| || || | || ||||| ||| | || || || ||||| || ||| || Sbjct 3460 TTCTACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTC 3401 Query 57843 GATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATG 57902 || || ||| | || ||| | ||||||| | || |||| || |||| || || Sbjct 3400 GAGACCTACATCAAAGACTCGGCCGAGAAATCCCGTCTCTTCAGGGCCGTCGACACCATC 3341 Query 57903 CCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || ||| |||| || ||||| ||||| | | |||||||| | || | ||| || Sbjct 3340 CCTTGCG-TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGAC 3285 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| ||| | | | || |||||| ||| ||||| || ||||| ||||| ||||| Sbjct 3284 TTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 3225 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 |||| | ||||||||| | || || ||||| |||||||| || ||||| || |||| Sbjct 3224 CTGCG-CGATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACG 3166 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||||| ||||| || || || ||||| || || |||||||| | ||||| Sbjct 3165 AGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC 3111 >seq49026 Length=4188 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || ||||| ||||| || |||||| |||| || || Sbjct 534 CAATCATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGA 593 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 594 GCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCG 653 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || ||||| || || ||| | || ||| |||| || ||||| Sbjct 654 ACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCCGATT 713 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || |||||||| || ||||| || | || ||||| |||| Sbjct 714 ACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGTGGTA 767 >seq57720 Length=9334 Score = 113 bits (124), Expect = 4e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 31180 AATTGAATC--AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTC 31237 |||| |||| || ||||||||||||||| || || || || ||||| || |||||| || Sbjct 7367 AATTCAATCCCAATCATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTC 7426 Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297 || || || ||||||| |||| | ||||| | || ||||||||| ||| Sbjct 7427 GAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGC 7486 Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357 | || || ||||||||| | ||||| ||||| || || ||| | || ||| || Sbjct 7487 ATCCCTCCTGACCAGCAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACC 7546 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 | ||| || ||||| || || || |||||||| || ||||| || | || ||||| Sbjct 7547 CTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGT 7606 Query 31418 GGTA 31421 |||| Sbjct 7607 GGTA 7610 >seq67744 Length=10152 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 522 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 463 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| || ||||||||| | || || |||||| Sbjct 462 GACACCATTGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 403 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 402 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGA-GAATGGACGCACCCTTGCTGACTACAA 344 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| |||||||||||||| ||||| || ||||| Sbjct 343 TATTCAAAAGGAATCGACTCTTCACCTGGTGCTCAGACT 305 >seq76293 Length=4593 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| || Sbjct 110 ATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTCA 169 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||| |||||| | || || ||||| Sbjct 170 GACACAATTGATAATGTCAAGGCAAAG-ATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | || ||| | ||| || ||||| || Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| |||||||| ||| |||| || Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCT 321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || || ||| | || || || || Sbjct 338 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 397 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| || ||| | ||||||||||||| | || || ||||| Sbjct 398 GATACAATTGATAATGTGAAAGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCAGACCA 456 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| || ||| | ||||| | |||| || ||||| || Sbjct 457 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAA 516 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||||| ||||| || || ||| Sbjct 517 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCTT 550 >seq58370 Length=11695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 1931 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 1990 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || || ||| Sbjct 1991 GACACCATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCCCCGGATCAG 2050 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || ||| | || || || | || || || Sbjct 2051 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGCACCCTTGCTGACTACAAT 2110 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||||||||| ||||| || ||||| | || |||| Sbjct 2111 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTA 2159 >seq62381 Length=5639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/234 (70%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA--C 31247 || |||||||||||||| || | |||||| || || || ||||| | || || || | Sbjct 848 AATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 789 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCC 31305 || || | |||| | |||||| | || | | |||||| |||||| | || Sbjct 788 AGT--GATACCATCGACAATGTCAAA--GCCAAGACCCAGGACAAAGAAGGCATCCCTGT 733 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || || ||| | || || || |||||||| || |||||||| || ||| | ||| Sbjct 732 AGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGAACTCTT-GCGG 674 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| ||||| || ||||||||||| ||||| | || || ||||| || Sbjct 673 TTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTAAGGGGAGG 620 >seq48708 Length=2547 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| || || || || || || || |||||| |||| || || | Sbjct 86 AACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTC 145 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || ||||||||| ||| | ||||| || Sbjct 146 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 205 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || ||||| ||||| ||| | || ||| || | ||| || Sbjct 206 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 265 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || || Sbjct 266 CAACATCCAGAAGGAGTCCACTCTCCACCTCGTGCT 301 >seq2078 Length=2300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || || | || Sbjct 1710 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 1769 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 1770 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGTATTCCCCCGGACCA 1828 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || || | ||||| || Sbjct 1829 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 1888 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || ||| |||| ||| | ||| | || |||| Sbjct 1889 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 1938 >seq102053 Length=8183 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || || | Sbjct 4555 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTGGAGGTGGAGTCC 4496 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||| ||| | ||||| ||| Sbjct 4495 TCCGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGAC 4436 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| || | ||| || Sbjct 4435 CAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCCGCACACTCGCCGACTAC 4376 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 4375 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 4341 >seq80270 Length=12149 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || || ||| | || || || || Sbjct 1506 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 1565 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| || ||| | ||||||||| ||| | || || ||||| Sbjct 1566 GATACAATTGATAATGTGAAAGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCGGACCA 1624 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | || ||||| ||||| || ||| | ||||| | |||| | ||| ||||| | Sbjct 1625 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGTCGGACTCT-AGCAGATTACA 1683 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||||| || || || ||||| || || ||| Sbjct 1684 ACATTCAAAAGGAGTCAACCCTTCACCTTGTCCTT 1718 >seq66408 Length=4853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || || || || |||||| | || || ||| ||| Sbjct 411 ATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTCC 352 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | ||||||||| || | || || || || Sbjct 351 GATACAATTGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGTATTCCCCCAGATCA 293 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || ||||||||||| ||| | ||| | || || || Sbjct 292 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 233 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| ||||| || | || |||| || ||||| | || || Sbjct 232 CATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445109886390240