Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq80815 113 6e-20 seq53411 107 2e-18 >seq80815 Length=8550 Score = 113 bits (124), Expect = 6e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||| ||| |||||||| | || | ||| || | |||| |||||| || ||| || Sbjct 7243 CCTTTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGG 7302 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 ||| || || || ||| | ||||| || || ||||||| ||| |||||||||| || Sbjct 7303 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTT 7362 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || || | ||| |||||||| || ||| ||| | || ||| || || || Sbjct 7363 GTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGT 7422 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| |||||||| ||||||||||| ||||| | || || |||||| Sbjct 7423 ATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 >seq53411 Length=6979 Score = 107 bits (118), Expect = 2e-18 Identities = 376/581 (65%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || || || |||| || || ||||| || || || || Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 3182 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || |||||||| ||||||||||| | ||| ||| || |||||| Sbjct 3183 CCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAG 3242 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33757 || ||||| || ||| || ||||| | | || ||| | || | | || ||| Sbjct 3243 ATCCCTTCCAC-GCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC--- 3298 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || | ||||| | ||||| || || ||||| || || || | ||| | Sbjct 3299 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCT 3358 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||| | ||| || ||||| | || || |||| | || || ||||| Sbjct 3359 GAAGAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 3418 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 3419 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 3478 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | || | | | || | ||| || || || || || ||| || Sbjct 3479 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 3538 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT- 34056 || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 3539 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 3598 Query 34057 -CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || |||| | ||| || || || | ||||| || || ||||| ||||| Sbjct 3599 GCGCTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTC 3656 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || ||||| | |||||| || | || || || ||||| || Sbjct 3657 TTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628890020384160