Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq76293 98.7 1e-15 seq49026 98.7 1e-15 seq2078 95.1 1e-14 seq102053 89.7 5e-13 seq62381 86.0 6e-12 seq66408 82.4 8e-11 >seq76293 Length=4593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || |||||||| |||||||| ||||| | Sbjct 336 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 277 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| || ||||| || || ||| |||| || | ||||| || || || Sbjct 276 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 217 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 216 ATGCCTTCTTTGTC-CTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 158 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || |||||||| || || || || |||||||| Sbjct 157 TTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||||||||| ||||| || || ||| ||||| ||||| Sbjct 541 GTGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTG 482 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| | || || | ||||| || ||||| |||||||| ||||| ||| | | Sbjct 481 CTTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC-CTGAATCT 423 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | ||| ||||| | ||| | ||||| || | Sbjct 422 TTGCTTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 363 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || || || || ||||| Sbjct 362 TAAGTGTCTTCACAAAGATCTGCAT 338 >seq49026 Length=4188 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| |||||| || || | ||| |||||||| || || Sbjct 735 GTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCG 676 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| |||||||| ||||| || ||||| ||| || || Sbjct 675 GCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 616 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | ||||||||||||| ||| Sbjct 615 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTT 556 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 555 TTCACGAAGATCTGCAT 539 >seq2078 Length=2300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 1864 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 1805 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 1804 TCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 1746 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 1745 AGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 1710 >seq102053 Length=8183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | ||||| ||| ||||||||||| || Sbjct 4356 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCGAGCTGTTTCCCG 4415 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 4416 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC 4475 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || ||||||||| | || | |||||| || || | ||| Sbjct 4476 ACATTGTCGATGGTGTCGGAGGACTCCACCTCCAGAGTGATCGTCTTCCCCGTTAGGGTT 4535 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 4536 TTCACGAAGATCTGCAT 4552 >seq62381 Length=5639 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || | ||||| || ||||| ||||| ||||| ||| ||| | || || || Sbjct 634 CAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCGCA-AGAGTTCTACCATC 692 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | || || |||||| ||||||| | || ||||| ||| |||||||||||||| Sbjct 693 TTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGGATGCCTTCTTTGTC 752 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 | | || ||| | | || | || || || ||| ||||||| || | || Sbjct 753 CTGGGTCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGT 812 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| ||||||| |||| ||||| ||||||||| Sbjct 813 CTTCCCGGTCAGAATTTTCACGAAAATTTGCATA 846 >seq66408 Length=4853 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || || || ||||||||||| || || | || || ||| || Sbjct 202 AACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTC 261 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||| ||| |||| || | |||||||| || || || || || ||||| Sbjct 262 CAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 321 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | ||| |||| | |||||||| | ||| | ||||| Sbjct 322 GATCTTTGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTT 381 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||| ||||| || || ||||| Sbjct 382 CCCAGTAAGCGTCTTTACAAAGATCTGCAT 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495333409342400