Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq80815 129 8e-25 seq53411 120 4e-22 >seq80815 Length=8550 Score = 129 bits (142), Expect = 8e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | ||| || | |||| |||||| || ||| ||||| Sbjct 7246 TTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGGAAT 7305 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 || ||||||||||| ||||| || || |||||||| ||| |||||||||| || Sbjct 7306 GATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTTGTG 7365 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || || | ||| |||||||| || ||| ||| | || ||| || || ||||| Sbjct 7366 AACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATC 7425 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||| ||||| || ||||||||||| ||||| | || || |||||| Sbjct 7426 ATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 >seq53411 Length=6979 Score = 120 bits (132), Expect = 4e-22 Identities = 376/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || || || |||| || | ||||| || || || || Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 3182 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 3183 CCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 3241 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 ||| ||||| || ||| ||||| || | || ||| | || | | | | | || Sbjct 3242 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 3301 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| || | ||||| | ||||| || || ||||| || || || | ||| | || Sbjct 3302 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAA 3361 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 |||| | ||| || ||||| | || || |||| | || || ||||| || Sbjct 3362 GAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 3421 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| ||||| || ||||| || |||||||| | ||||| | | ||| Sbjct 3422 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 3481 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | || | | | || | ||| || || || ||||| ||| || || Sbjct 3482 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 3541 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT--CA 50436 || || | || || | || || || || ||| ||| ||||| | | ||| | | Sbjct 3542 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 3601 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || |||| | ||| || || || | ||||| || || ||||| ||||| || Sbjct 3602 CTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 3659 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| | |||||| || | || || || ||||| || Sbjct 3660 TACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717210951668080