Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq62381 96.9 3e-15 seq2078 93.3 3e-14 seq57720 82.4 6e-11 >seq62381 Length=5639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||||| || | ||| ||||||||| | |||||| || | Sbjct 620 CCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCGCAA 679 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| ||||| ||||| |||| || ||||||||| | || Sbjct 680 GA-GTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGG 738 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || | || ||||||| || | | || || | |||||| Sbjct 739 ATGCCTTCTTTGTCCTGGGTCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACC 798 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| ||| ||||||| ||||||||||| || || Sbjct 799 TCAATAGTGATGGTCTTCCCGGTCAGAATTTTCACGAAAATTTGCATATTGTT 851 >seq2078 Length=2300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||||| || |||||| || | ||||||||| | Sbjct 1936 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 1877 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||| ||||| |||| ||||| || || | || Sbjct 1876 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 1817 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| || | || || || ||| ||||| || ||| || Sbjct 1816 ATACCCTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 1758 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 1757 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 1710 >seq57720 Length=9334 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42879 GTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATC 42938 ||| || ||||| || | | ||||| || | ||| |||||| || | |||||||| Sbjct 8068 GTCACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC 8009 Query 42939 GGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGC 42998 | || ||||| |||| || | || ||||||||||| ||||| | ||| || || | Sbjct 8008 AGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGG 7949 Query 42999 CGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CT 43057 || | ||||| || || |||| ||||||| | ||| || || | ||| || Sbjct 7948 TGGGATCCCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATC-CGAGCTCT 7890 Query 43058 CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || | || || || || || || | ||| ||||||||||| ||||| Sbjct 7889 CAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 7838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380821970177676