Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq53411 120 4e-22 seq80815 102 1e-16 >seq53411 Length=6979 Score = 120 bits (132), Expect = 4e-22 Identities = 376/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || || ||||||| || || ||||| || || || || Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 3182 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| || || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 3183 CCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 3241 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || ||||| | | || ||| | || | | | | || Sbjct 3242 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 3301 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| || | ||||| | ||||| || || ||||| || || || | ||| | || Sbjct 3302 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAA 3361 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||| | ||| || ||||| | || || |||| | || || ||||| || Sbjct 3362 GAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 3421 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| ||||| || ||||| || |||||||| | ||||| | ||||| Sbjct 3422 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 3481 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | || | | | || | ||| ||| || || ||||| ||| || || Sbjct 3482 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 3541 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT--CA 42541 || || | || || | || || | || ||| | || |||| | | ||| | | Sbjct 3542 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 3601 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 || |||| | ||| || || || | ||||| || || || || ||||| || Sbjct 3602 CTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 3659 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||||| | |||||| || | || ||||| ||||| || Sbjct 3660 TACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 >seq80815 Length=8550 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | |||||| | ||||||||| || || || |||||| | ||||| |||| | Sbjct 7598 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCATCGCTGAGACATGAGATGG 7657 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || ||| | ||||| ||||| | ||| |||||||| || || || | ||||| Sbjct 7658 TATGTTCTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 7716 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 |||||||||||| || || || | ||| | | || || | ||| || | || | Sbjct 7717 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 7776 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || |||||||| |||| || |||||| || || ||||| || Sbjct 7777 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 7824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670150762964720