Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq62381 111 1e-19 seq58370 102 6e-17 seq76293 100 2e-16 seq67744 93.3 3e-14 seq28101 93.3 3e-14 seq80270 91.5 1e-13 seq101134 89.7 4e-13 seq57720 84.2 2e-11 >seq62381 Length=5639 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||||||| ||| ||| |||| | ||||| ||||| Sbjct 644 TGAAGAGTCGACTCCTTTTGGATGTTGTAACCGCA-AGAGTTCTACCATCTTCCAATTGC 702 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | ||||| || || || ||||||||||| | ||| Sbjct 703 TTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGGATGCCTTCTTTGTCCTGGGTCTTG 762 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || |||||||| || | || || || | || ||||| || || ||| Sbjct 763 GCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTC 822 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 ||| |||| || |||||||||||||| Sbjct 823 AGAATTTTCACGAAAATTTGCATATT 848 >seq58370 Length=11695 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 3045 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 2986 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | ||| ||||| || || || || ||||| ||| || Sbjct 2985 TTTCCAGCAAATATGAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTA 2926 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || || || ||||| || ||||| Sbjct 2925 GCT-TTCACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGT 2867 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || |||||| ||||| ||||||||| Sbjct 2866 CAAAGTTTTGACAAAGATTTGCATA 2842 >seq76293 Length=4593 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| ||| | ||| | ||||| | || Sbjct 540 TGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGC 481 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | || ||||| ||||| ||||| ||||| ||| ||| Sbjct 480 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTT 421 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 420 GCT-TTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 362 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 361 AAGTGTCTTCACAAAGATCTGCAT 338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 318 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 259 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | || | | || ||||| ||||| ||||||||||| | Sbjct 258 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 199 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || || || || |||| || || || ||||||||||| Sbjct 198 ATCTTTGC-CTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 140 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || |||||||||||||| Sbjct 139 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq67744 Length=10152 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||||||||| || ||||| ||||||||||| || | | | || || Sbjct 86 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 145 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| ||| || || ||||| || | Sbjct 146 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 205 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || ||||| || | | || || || ||||| |||||||| Sbjct 206 ATCTTTGC-CTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 264 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 265 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 294 >seq28101 Length=418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 8 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 67 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| |||| | | || ||||| || || || || || || ||| ||| Sbjct 68 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 127 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || ||||| | | ||||| || || || ||||| || || ||| Sbjct 128 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCGGTC 187 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 188 AGAGTTTTGACAAAGATCTGCATA 211 >seq80270 Length=12149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| |||| | | | ||||| | || Sbjct 1708 TGAAGGGTTGACTCCTTTTGAATGTTGTAATCTGCTAGAGTCCGACCATCTTCAAGCTGC 1649 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | || ||||| ||||| || || ||||| ||| ||| Sbjct 1648 TTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTT 1589 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 1588 GCT-TTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 1530 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 1529 GAGGGTCTTCACAAAGATCTGCAT 1506 >seq101134 Length=8483 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || |||||||||||||| || || || ||||||||||| || || | | | || || Sbjct 8109 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAAG-GTGCGGCCATCCTC 8167 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | |||| ||| || ||||| |||||||| || ||||| Sbjct 8168 AAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 8227 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || ||||| || | || || || ||||| ||||| || Sbjct 8228 AATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 8287 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 8288 TCCGGTCAAGGTCTTGACAAAGATCTGCATA 8318 >seq57720 Length=9334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||||||||| || | | |||| || Sbjct 8046 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 7987 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | || ||||| ||| || ||||| || || Sbjct 7986 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 7927 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || |||||||| | || || || || || ||||| || Sbjct 7926 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 7867 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || |||||||| ||||| Sbjct 7866 CCTGTCAAAGTCTTCACAAAAATCTGCAT 7838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361659126740502