Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq80270 93.3 3e-14 seq66408 93.3 3e-14 seq58370 93.3 3e-14 seq62381 91.5 1e-13 seq87988 87.8 1e-12 seq76293 82.4 6e-11 >seq80270 Length=12149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 1258 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 1199 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 1198 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 1143 >seq66408 Length=4853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 203 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 262 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 263 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | ||||| |||||||| ||||||||||| | Sbjct 411 TTCCACCACGCAGACGGAGCACCAGGTGAAGAGTAGATTCCTTTTGGATATTGTAATCAG 470 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| |||||||| || ||| | || || ||||||||||| || Sbjct 471 CAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATGAGCCTCTGCTGATCTGGGG 530 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| || || || || | ||| ||||| | ||| Sbjct 531 GGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATCGTATCAGAACTCTCAA 590 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 591 CCTCTAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCAT 639 >seq58370 Length=11695 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 2824 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTC 2765 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || ||| | ||||| ||||| Sbjct 2764 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 2705 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 2704 AATTTTAGCTTTCACATTATCAATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 2648 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 2647 TTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 2615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| |||||||| || | || | | ||||| ||||| || || Sbjct 3039 GTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTTCCA 2980 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || || ||||| ||| || | |||||| ||||| ||| || ||| Sbjct 2979 GCAAATATGAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTC 2920 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || ||||| || ||||| |||||| Sbjct 2919 ACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTCAAAGTT 2860 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| |||||||| Sbjct 2859 TTGACAAAGATTTGCAT 2843 >seq62381 Length=5639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| ||||||| ||| | || ||||||||||| || |||||| ||| Sbjct 618 TTCCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAA-CCG 676 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || |||| || || || ||| | || |||||||| ||||| || | Sbjct 677 CAAGAGTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAG 736 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| |||||||| | || ||| || | | ||| ||||| | ||| Sbjct 737 GGATGCCTTCTTTGTCCTGGGTCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGA 796 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || ||||| || || || | | |||| || ||||||||||| || Sbjct 797 CCTCAATAGTGATGGTCTTCCCGGTCAGAATTTTCACGAAAATTTGCATATT 848 >seq87988 Length=3988 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| ||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 1611 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 1670 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | || |||| ||| ||||| ||| |||| |||||||||||||| | Sbjct 1671 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAG 1730 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 1731 GGATGCCTTCCTTGTC 1746 >seq76293 Length=4593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| ||||| ||||||||||| ||||| || || | ||| | |||||||| Sbjct 90 ACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 31 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGC 18922 | ||||||||| ||| | || || |||||| Sbjct 30 AACTGTTTACCTGCAAAGATGAGCCTCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413977491855868