Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq76293 86.0 4e-12 seq2078 84.2 1e-11 >seq76293 Length=4593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCA 33217 ||||||||||| ||||||||||| || || |||||||| | | | || || ||| Sbjct 319 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC--AGTGTCCTGCCGTCC 262 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || | |||||||| ||| || | | |||||||| | ||| ||||||||||| || Sbjct 261 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 202 Query 33278 CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 |||| ||| || || | | ||| ||||| | || || |||| ||| || Sbjct 201 TGAATCTTTGCC---TTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATG 145 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || || ||||||||||| Sbjct 144 GTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq2078 Length=2300 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/217 (70%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCAT 33218 ||||||||| | |||||||| || || ||||||||||||| ||| | ||| || ||| Sbjct 1919 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAG-CAA---GGGTTCGGCCAT 1864 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||||| ||| ||| || | ||| |||||||||| ||| || || || || | Sbjct 1863 CCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGT 1804 Query 33276 CGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | |||| ||| || || | | ||| ||||| | | || || || || | Sbjct 1803 CCTGAATCTTGGCC---TTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGA 1747 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || ||||| |||||||||||||| Sbjct 1746 TAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 1710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318319849512156