Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq76293 98.7 7e-16 seq115991 91.5 1e-13 seq58370 87.8 1e-12 seq80270 84.2 2e-11 seq49026 84.2 2e-11 >seq76293 Length=4593 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || |||||| ||||| || ||||| | | || | || | || Sbjct 319 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC-TGCCAGTGTC-CTGCCGTCC 262 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 261 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 202 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 201 TGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTT 142 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| |||||||| Sbjct 141 TTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq115991 Length=9835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || ||| |||| ||||| || ||||| ||||| Sbjct 6438 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCAAA 6379 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||| ||| ||| | || | ||| || |||||| ||| || |||||| | Sbjct 6378 GATCAAC-----CTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGCTTTGACATT 6324 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || |||| |||||| Sbjct 6323 GTCAATGGTATCAGAGCTCTCCACCTCCATAGTGATGGTCTTGCCAGTCAAAGACTTCAC 6264 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 6263 AAAAATCTGCATG 6251 >seq58370 Length=11695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || || || | | |||| | Sbjct 2824 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-AGCAAGTGTCCTTCCATCCT 2766 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || || || Sbjct 2765 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 2706 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || ||| || || | ||||| || | || || |||| Sbjct 2705 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 2646 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 2645 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 2614 >seq80270 Length=12149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || ||| || || || || ||||| | | || | || |||| Sbjct 1487 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC-TGCCAGTGTC-CTACCATCC 1430 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 1429 TCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 1370 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 1369 TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 1310 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| |||||||| Sbjct 1309 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 1278 >seq49026 Length=4188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| || || ||||| ||||| | ||| |||| || Sbjct 1203 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1144 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || |||||||| ||||||| ||||||||| | || | |||||| ||||| Sbjct 1143 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1084 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | ||| || || | |||||| || | ||||| || || Sbjct 1083 ATCTTGGCCTTGACGTTGTCAATCGTGTCAGAGCTCTCCACCTCCAGGGTAATGGTCTTC 1024 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 1023 CCTGTCAAAGTCTTCACAAAGATCTGCAT 995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354268155109656