Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq62381 116 3e-21 seq76293 96.9 3e-15 >seq62381 Length=5639 Score = 116 bits (128), Expect = 3e-21 Identities = 108/136 (79%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | || ||||||||||| || || || || || ||||| ||||||||| ||| Sbjct 618 TTCCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCGC 677 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || |||||||||||| ||||| ||| | || || ||||||||||| || | Sbjct 678 A-AGAGTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAG 736 Query 20100 GCACGCCTTCTTTGTC 20115 | | |||||||||||| Sbjct 737 GGATGCCTTCTTTGTC 752 >seq76293 Length=4593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || || ||||| || ||||||||||| ||| || | || || Sbjct 319 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 260 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | || |||||||| || || ||| | |||||||||||| Sbjct 259 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 200 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| || || | ||| | || |||| ||||| ||||||||||| Sbjct 199 AATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 140 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||||||| || || ||||||||||||||| Sbjct 139 CCCGGTCAAAGTCTTCACAAAAATTTGCATT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418984691399982