Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2078 98.7 8e-16 seq67744 95.1 1e-14 seq57720 95.1 1e-14 seq46178 95.1 1e-14 seq49026 87.8 2e-12 seq101134 86.0 5e-12 seq28101 82.4 6e-11 >seq2078 Length=2300 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || || |||||| || || ||||||||||| Sbjct 1937 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGC 1878 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| | ||||| |||||||| || | | || | ||||||||| ||| || Sbjct 1877 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 1818 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||| | | ||||| || | ||||||| Sbjct 1817 AATACCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 1758 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || |||||||| |||||||| ||||| |||||| Sbjct 1757 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 1709 >seq67744 Length=10152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||||||||| ||| |||||||||||||||||||||||||| || | ||||| Sbjct 85 CACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTC 144 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | | |||||| || || | || || || ||| Sbjct 145 AAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 204 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | ||||| || | | ||| ||| | ||||||||||| Sbjct 205 AATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 264 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| |||||||| || ||||| Sbjct 265 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 294 >seq57720 Length=9334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||||||||||| || ||||||| Sbjct 8046 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 7987 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | |||||| ||| || | | |||||| ||| Sbjct 7986 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 7927 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | ||| ||| | || ||||| || Sbjct 7926 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 7867 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||||||||||||| Sbjct 7866 CCTGTCAAAGTCTTCACAAAAATCTGCATC 7837 >seq46178 Length=11793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 2769 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 2710 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||||||| || || ||||| | Sbjct 2709 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 2650 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | |||| ||||| || ||||| || || || || |||||||| Sbjct 2649 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 2590 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 2589 AAAATCTGCATC 2578 >seq49026 Length=4188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| ||| || | Sbjct 730 CTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 671 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| || || | | ||||||||| || || ||||| | Sbjct 670 GATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 611 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||| ||||| || ||||| || ||||| || |||||| Sbjct 610 GTCG--ATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTTTTC 553 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 552 ACGAAGATCTGCAT 539 >seq101134 Length=8483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| ||||| || ||||||||||| ||||| || | ||||| Sbjct 8108 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTC 8167 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | ||||||||| ||| || | | ||||||||| Sbjct 8168 AAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 8227 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | ||||| || | |||| ||| | || ||||| || Sbjct 8228 AATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 8287 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || || ||||| |||||||| Sbjct 8288 TCCGGTCAAGGTCTTGACAAAGATCTGCAT 8317 >seq28101 Length=418 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||| | ||| || | | | ||||| ||||| Sbjct 8 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTG-CAAGAGTCCTCCCATCCTCGAGCTG 66 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | |||||| || || | | ||||| ||| ||| || Sbjct 67 CTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTT 126 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | || ||||| | | ||| ||| | ||||||||| || ||||| Sbjct 127 GGCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCGGT 186 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| ||||| |||||||| Sbjct 187 CAGAGTTTTGACAAAGATCTGCAT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420646301969822