Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq72419 113 2e-20 seq67863 113 2e-20 seq66880 109 3e-19 seq17739 107 1e-18 seq112294 102 4e-17 seq59029 102 4e-17 seq52615 100 1e-16 seq83260 96.9 2e-15 seq59868 95.1 6e-15 seq51146 95.1 6e-15 seq95099 93.3 2e-14 seq5362 91.5 8e-14 seq63086 86.0 3e-12 seq12154 86.0 3e-12 seq89871 82.4 4e-11 >seq72419 Length=5455 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | |||| ||||||||||||| | | |||||||| ||||||||||||||||| Sbjct 91 AATTAAATATAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 32 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||||| |||| |||||||||| || Sbjct 31 GCACGACGCTCTAACCAGCTGAGCTAATAGG 1 >seq67863 Length=5151 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 510 AAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 451 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||||| ||||| Sbjct 450 CTCTAACCAGCTGAGCTAATAGGCCG 425 >seq66880 Length=14316 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 11331 AAAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 11388 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 11389 GCTCTAACCAGCTGAGCTAATAGGCC 11414 >seq17739 Length=585 Score = 107 bits (118), Expect = 1e-18 Identities = 89/107 (83%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| | ||| | || ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 386 TAATATAGAATAACAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 327 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGAT 11544 |||||||||| |||| |||||||||| |||| | || | ||||||| Sbjct 326 ACGACGCTCTAACCAGCTGAGCTAATAGGCCAATTGATGCTTGTGAT 280 >seq112294 Length=1351 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 983 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1042 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1043 CTGAGCTAATAGGCC 1057 >seq59029 Length=856 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 439 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 380 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 379 CTGAGCTAATAGGCC 365 >seq52615 Length=5683 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2655 AAAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 2598 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 2597 GCTCTAACCAGCTGAGCTAATAGGCC 2572 >seq83260 Length=21314 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||||||| || |||||||| | | |||||||| |||||||||||||| Sbjct 1573 AGAAT--ATAAAAAA---AACTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTAT 1519 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 1518 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 1484 >seq59868 Length=5775 Score = 95.1 bits (104), Expect = 6e-15 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| || | ||||||||| |||||||| | | |||||||| |||||||||| Sbjct 2369 AGAAAGAAAACAAAATCAAAAAACATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCG 2428 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| |||||||||| |||| Sbjct 2429 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 2467 >seq51146 Length=7713 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| || || ||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 4371 TTAAAAATTAAAAAAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGC 4430 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 4431 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 4461 >seq95099 Length=7456 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1334 AAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1275 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1274 CAGCTGAGCTAATAGGCC 1257 >seq5362 Length=1320 Score = 91.5 bits (100), Expect = 8e-14 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC- 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 10 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCA 69 Query 11530 GTCGACGATTGTGA 11543 | || || ||||| Sbjct 70 CTTGATGACTGTGA 83 >seq63086 Length=3063 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 872 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 814 >seq12154 Length=769 Score = 86.0 bits (94), Expect = 3e-12 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 355 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTTGCGTTATTAGCACAACGCTCTAAC 414 Query 11512 CAACTGAGCTAATGGGCC--GTCGACGATT 11539 || |||||| || |||| || ||| ||| Sbjct 415 CAGCTGAGCCGATAGGCCATGTTGACAATT 444 >seq89871 Length=8093 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC- 11529 |||||||| ||||||||||||||||||| |||||| || |||| |||||||||| |||| Sbjct 7599 TCGAACCTGCGACCTTCGCGTTATTAGCTCGACGCCCTAACCAGCTGAGCTAATAGGCCA 7540 Query 11530 -GTCGACGATT 11539 || ||| ||| Sbjct 7539 TGTTGACAATT 7529 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261115710240472