Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq53636 165 1e-36 seq781 165 1e-36 seq67938 143 4e-30 seq105397 134 2e-27 seq9569 111 2e-20 seq52233 102 1e-17 >seq53636 Length=2312 Score = 165 bits (182), Expect = 1e-36 Identities = 199/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || |||||||| || || || |||||||| ||||| Sbjct 267 GCCAAGCGTCACAGGAAGGTC-CTCCGGGATAACATTCAGGGCATTACCAAGCCCGCTAT 325 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| ||||| || || |||||| |||| || | |||||||||||| Sbjct 326 TCGCCGTTTGGCTCGCCGTGGCGGTGTTAAGCGTATCTCCGGTCTTATCTATGAAGAGAC 385 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | |||||||||||| ||| ||| |||| ||| || || || || || Sbjct 386 TCGTGGAGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGA 445 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| | ||||| |||||| |||||||| | |||||||| ||||| | || || Sbjct 446 GCACGCTCGCAGGAAGACCGTCACCGCCATGGATGTTGTCTATGCTTTGAAGAGGCAGGG 505 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 506 AAGGACTCTCTATGGATTTGGGGGTTAA 533 >seq781 Length=5728 Score = 165 bits (182), Expect = 1e-36 Identities = 196/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| | ||||||||||| || ||||||||||| || ||| Sbjct 3081 GCCAAGCGTCACCGGAAGGTTCTCAGGGATAACATCCAGGGCATCACCAAGCCCGCCATC 3022 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| | ||||| ||||||||| |||| || | |||||||||||| Sbjct 3021 CGCCGTTTGGCTCGCAGAGGTGGCGTCAAGCGTATCTCCGGCCTCATCTATGAAGAGACC 2962 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | |||||||||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 2961 AGAGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAG 2902 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | |||||||| ||| |||||||| |||| ||||| | || | || || Sbjct 2901 CACGCCCGGAGGAAGACTGTGACCGCCATGGATGTCGTGTATGCTCTCAAGAGGCAGGGA 2842 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||||||| |||| Sbjct 2841 AGGACCCTCTATGGTTTTGGAGGTTA 2816 >seq67938 Length=4130 Score = 143 bits (158), Expect = 4e-30 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || ||||| ||| ||||||| | || || ||| Sbjct 3536 GATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGCGGCGTC 3595 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | || | |||||||| ||| || Sbjct 3596 AAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGCGTCCTCAAGATCTTTCTCGAG 3655 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || || || ||||||||| | ||||| |||||| || Sbjct 3656 AACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGCAGGAAGACCGTCACCGCC 3715 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| ||||| | ||||| Sbjct 3716 ATGGATGTTGTTTATGCTTTGAAGAGGCAAGG 3747 >seq105397 Length=5788 Score = 134 bits (148), Expect = 2e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| || || || ||||| ||||| ||||| || ||| Sbjct 723 GATAACATCCAGGGCATCACAAAGCCCGCCATTCGCCGTCTCGCTCGCCGTGGCGGCGTC 782 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| || |||| ||||| || | ||||| || ||| || Sbjct 783 AAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATTTTTCTCGAG 842 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || | || || |||||||| | ||||| |||||| || Sbjct 843 AACGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCCGCAGGAAGACCGTCACCGCC 902 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 903 ATGGATGTCGTCTATGC 919 >seq9569 Length=911 Score = 111 bits (122), Expect = 2e-20 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||||||||| || ||||| ||| ||||||| | ||||| ||| Sbjct 738 GATAACATTCAGGGCATCACCAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGTGGCGTC 797 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| ||||||| | | ||| | |||||||| ||| || Sbjct 798 AAGCGTATCTCCGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTCGAG 857 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 | ||| |||| ||| || || || || ||||||||| Sbjct 858 AACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCT 896 >seq52233 Length=3119 Score = 102 bits (112), Expect = 1e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 450 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCATACGCCGTCTCGCTCGCCGTGGC 391 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||| | || || | |||| || |||| |||| || | ||||||||| Sbjct 390 GGAGTCAAGAGGATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 331 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| || || | || ||||||||||| | | ||||| || Sbjct 330 CTGGAGAATGTGATCCGCGACGCCGTGACGTACACCGAGCACGCCAGGAGGAAGACGGTG 271 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| ||||||| || | || | |||||| Sbjct 270 ACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAAGGC 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78967474520646