Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq80815 107 2e-18 seq53411 107 2e-18 >seq80815 Length=8550 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || |||| ||| |||||||| | || | ||| || | |||| |||||| || ||| || Sbjct 7243 CCTTTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGG 7302 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 ||| || || || ||| | ||||| || || |||||||| ||| |||||||||| || Sbjct 7303 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTT 7362 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || || | ||| |||||||| || ||| ||| | || ||| || || || Sbjct 7363 GTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGT 7422 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| || || || ||||||||||| ||||| | || || |||||| Sbjct 7423 ATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 >seq53411 Length=6979 Score = 107 bits (118), Expect = 2e-18 Identities = 378/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || || || |||| || | ||||| || || || || Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 3182 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || |||||||| ||||||||||| | ||| ||| || |||||| Sbjct 3183 CCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAG 3242 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33479 || ||||| || ||| || ||||| | | || ||| | || | | || ||| Sbjct 3243 ATCCCTTCCAC-GCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC--- 3298 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| || | ||||| | ||||| || || ||||| || || || | ||| | Sbjct 3299 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCT 3358 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||| | ||| || ||||| | || || |||| | || || ||||| Sbjct 3359 GAAGAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 3418 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 3419 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 3478 Query 33660 CTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || || | || | | |||| || | ||| || || || ||||| ||| | Sbjct 3479 CTGGACCTC-CTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGG 3537 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 3538 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGT 3597 Query 33779 --CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || |||| | ||| || || || | ||||| || || ||||| ||||| Sbjct 3598 GGCGCTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTT 3655 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| || || || || ||||| || Sbjct 3656 CTTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622029738937520