Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq62381 98.7 8e-16 seq87988 96.9 3e-15 seq76293 93.3 4e-14 seq67744 86.0 5e-12 >seq62381 Length=5639 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| || |||| || || || || ||||| || | || ||| | Sbjct 848 AATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 789 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | ||||| || ||| || | || ||||||||| |||| || || Sbjct 788 AGTGATAC-CATCGACAATGTCAAAGCCAAGACCCAGGACAAAGAAGGCATCCCTGTAGA 730 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| || | ||| ||||| ||||| ||||||| | ||| | | || ||| Sbjct 729 TCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGAACTCTTG-CGGTTA 671 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| ||||| ||| | || |||||||||| | | ||||||| Sbjct 670 CAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTAAGGGGAGGAA 618 >seq87988 Length=3988 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| |||||||| ||||| |||| ||| || || || || ||| Sbjct 1746 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 1687 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || |||||||| || ||||||||||| ||| | || | |||||| Sbjct 1686 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 1627 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 1626 AGGTTGAGGGGAGGAA 1611 >seq76293 Length=4593 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || || ||||||||||| | ||| ||| | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||| ||| || ||||||||| | ||| || || Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || | || || | || || |||| ||||| || Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||| |||||||| ||| | ||| ||||| Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 319 >seq67744 Length=10152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 294 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 235 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| |||||||| || |||| || || Sbjct 234 GACACCATTG-ACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 176 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| || || || | || |||| | ||| |||| ||||| || Sbjct 175 GCAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 116 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||| || | ||| | ||| Sbjct 115 CATTCAAAAGGAGTCCACCCTTCATTTAGTG 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424733224890640