Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq62381 107 2e-18 seq101134 105 5e-18 seq48708 104 2e-17 seq102053 100 2e-16 seq66408 95.1 1e-14 seq57720 93.3 3e-14 seq80270 89.7 4e-13 seq58370 87.8 1e-12 seq49026 86.0 5e-12 seq67744 84.2 2e-11 >seq62381 Length=5639 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || || ||||||||||| |||||||| | || Sbjct 620 CCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTA-ACCGCA 678 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||| ||||| ||| | || || | |||||| || ||||| Sbjct 679 AGAGTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGG 738 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| || || | | | | || || | | ||| Sbjct 739 ATGCCTTCTTTGTCCTGGGTCTTGGCT--TTGACATTGTCGATGGTATCACTGCTCTCGA 796 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | |||||||| || |||||||| |||| || ||||| ||||| |||| Sbjct 797 CCTCAATAGTGATGGTCTTCCCGGTCAGAATTTTCACGAAAATTTGCATATTGT 850 >seq101134 Length=8483 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||||||||| |||| ||| | | ||| Sbjct 7878 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 7937 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||||| ||| ||||| || | ||||| ||||| Sbjct 7938 TCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 7997 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | |||| |||| |||||||| Sbjct 7998 TGGATCTTAGC--CTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGG 8055 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||| || |||||||| |||||||| Sbjct 8056 TCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || |||||||| || | ||| | ||||| | || Sbjct 7659 TGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCGAGGGTACGCCCATCCTCGAGCTGC 7718 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | ||||||| ||| ||||| || | ||||| ||||| ||| | Sbjct 7719 TTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTG 7778 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | |||| || | ||||||||| || || || Sbjct 7779 GCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTA 7838 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||||||||| Sbjct 7839 AGAGTCTTGACAAAAATCTGCAT 7861 >seq48708 Length=2547 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 292 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 233 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || ||||| |||||| || | |||||| ||||| || || Sbjct 232 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 173 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| || |||| || | ||||||||| || || | Sbjct 172 GC--CTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCG 115 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 114 TTAGGGTTTTCACGAAGATCTGCAT 90 >seq102053 Length=8183 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | || | ||||| Sbjct 4341 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCC 4400 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | |||||| ||||| Sbjct 4401 TCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCT 4460 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| || |||| |||| ||||| | Sbjct 4461 TGGATCTTGGC--CTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAGAGTGATCG 4518 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || ||||| || || |||||||| ||| Sbjct 4519 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 4556 >seq66408 Length=4853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| ||||||||||| || | ||| | ||||| Sbjct 200 AGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCC 259 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || |||| ||| || || || | ||||| ||||| Sbjct 260 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCC 319 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | || ||| | ||| |||| |||||| | Sbjct 320 TGGATCTTTGC--CTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTG 377 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || ||||| || ||||| ||||||||| Sbjct 378 TCTTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || |||||||| || || ||||||||||| || Sbjct 641 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCG 700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || ||||| ||| | || |||| ||||||||| || Sbjct 701 AGTGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 760 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| || || | | | | |||||| | || Sbjct 761 ATTCCCTCCTTGTCTTGGATCTTTGCT--TTGACATTGTCAATAGTGTCAGAGCTTTCAA 818 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 819 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 >seq57720 Length=9334 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||||| Sbjct 7593 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCC 7534 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || |||| ||| ||||| ||| | |||||| ||||| Sbjct 7533 TCAAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 7474 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| || | |||||||| Sbjct 7473 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGG 7416 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || ||||| ||||| Sbjct 7415 TCTTGCCGGTTAGGGTTTTCACGAAAATTTGCAT 7382 >seq80270 Length=12149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| |||||| || |||||||| ||||||||||| || || Sbjct 1505 CCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGC 1446 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || ||| | || |||| ||| ||||| || Sbjct 1445 CAGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 1386 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||| | | ||| || | | | ||||| | ||| Sbjct 1385 AATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 1326 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||| || |||| || || ||||| || |||||| Sbjct 1325 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 1277 >seq58370 Length=11695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| || || ||||| || | || | | ||| Sbjct 2826 AGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCC 2767 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| |||| | || ||| ||||| || | ||||| ||||| Sbjct 2766 TCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 2707 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | ||||| | ||| ||||| ||||||| Sbjct 2706 TGAATTTTAGCT--TTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGG 2649 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| || ||||| Sbjct 2648 TTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 2615 >seq49026 Length=4188 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || ||||| || |||| ||||| || |||||||| || || ||||| || || Sbjct 994 CCCACCACGAAGCCTGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGC 935 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || || | ||||||||||| || || || | || | || ||| |||||| || Sbjct 934 AAGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGTGG 875 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || ||||| || || || ||| || | | | | || || | |||| Sbjct 874 GATCCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATGGTATCAGAGCTCTCC 817 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || |||||||| || |||||||| || |||||||| Sbjct 816 ACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 767 >seq67744 Length=10152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||| || |||||||||||||| |||||||| || ||| Sbjct 68 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 127 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || || | ||| ||||| || Sbjct 128 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 187 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||| || || ||||| |||||| | | | | ||||| ||| Sbjct 188 ATACCCTCTTTATCCTGAATCTTTGC--CTTCACGTTGTCAATGGTGTCAGAACTCTCAA 245 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| |||||||| || || || || || ||||| || ||||| Sbjct 246 CCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404506311607780