Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq56964 131 1e-25 seq66408 123 2e-23 seq76293 113 3e-20 seq80270 107 1e-18 seq70022 107 1e-18 seq49026 100 2e-16 seq101134 93.3 3e-14 seq67744 91.5 1e-13 seq58370 91.5 1e-13 seq62381 84.2 1e-11 seq46178 82.4 5e-11 >seq56964 Length=746 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 379 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 380 GGTCATATTTAGCCTTA 396 >seq66408 Length=4853 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| |||||||| |||||||| |||||||||| Sbjct 409 CATT-CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGATTCCTTTTGGATATTGTAAT 467 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || | || |||| ||||| ||||||||||| || | || ||||| | Sbjct 468 CAGCAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATGAGCCTCTGCTGATCTG 527 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || |||||| || ||| ||| ||||| | || ||||| ||| | Sbjct 528 GGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATCGTATCAGAACTCT 587 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| |||||||| || || || || || | || || || || ||||||||| Sbjct 588 CAACCTCTAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 640 >seq76293 Length=4593 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| ||| || ||||| |||||||| | | Sbjct 336 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 277 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| || | || ||||| ||||| || || | || || || | ||| Sbjct 276 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 217 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| ||| ||| ||||| | | || ||| ||||| ||| Sbjct 216 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 157 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 156 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq80270 Length=12149 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| || || |||||||| | | Sbjct 1504 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 1445 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || ||||| ||||| || || | || || || | ||| Sbjct 1444 AGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 1385 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| || ||| ||||| | | || ||| ||||| ||| Sbjct 1384 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 1325 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 1324 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 1278 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| |||||||| ||||||||||||||||| |||| | ||| | || || Sbjct 802 ACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGTCCATCCTCA 743 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || | | ||| || || | ||||| || || ||||| Sbjct 742 AGCTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 683 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| ||||| | | ||| || |||||||| || | || ||||| || Sbjct 682 ATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTG 623 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||||||||| || ||||||||| Sbjct 622 CCTGTGAGGGTTTTCACAAAGATCTGCATG 593 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || | || ||||||||||| ||||| | Sbjct 1280 CATT-CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGT 1222 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | | | |||| || || ||||| || ||||| || || | || ||||| | Sbjct 1221 CTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTG 1162 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || |||||| || ||| || ||||| | | ||||| |||| Sbjct 1161 GGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTGTCAATTGTATCAGAGCTTT 1102 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || || || || |||| ||| ||||| || || ||||| Sbjct 1101 CCACCTCCAATGTGATTGTCTTCCCAGTCAGGGTCTTCACAAAGATTTGCAT 1050 >seq70022 Length=4677 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||| |||||||||||||| ||||||| ||||||||| |||| || ||||| ||||| Sbjct 4468 CCCATTCCCTTGGCTGTGATTTCGCTGGATAGTAGACAGGGACAATGGGAATCTGGTTAA 4527 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||| ||||||||||||||||||| Sbjct 4528 TCCATTCATGCGTGTCACTAATTAGATGACGA 4559 >seq49026 Length=4188 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||| | ||||| || ||||| |||||| || || |||||||| | Sbjct 767 TACCACCCCTGAGACGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGG 708 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | || |||||||| || || || | || || |||| | Sbjct 707 CCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAG 648 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| || || ||| || || | || || || || || | Sbjct 647 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 588 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || |||| |||||||||||| ||||||||| || Sbjct 587 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATGATT 535 >seq101134 Length=8483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| ||| ||||| || || ||||| || | Sbjct 7861 TACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTG 7920 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| | || || | || ||||||||||| || || | || || || | | Sbjct 7921 CCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTG 7980 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||| | || || ||| || || | Sbjct 7981 GGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCA 8040 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||||||| || || || |||||||| Sbjct 8041 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| ||| ||||| || || |||||||| | Sbjct 8089 TACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTG 8148 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||| ||||| || || || || || || | || Sbjct 8149 CCAAGGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 8208 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| || ||| ||||| | | || ||| || || | Sbjct 8209 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCA 8268 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||||||| || || || |||||||| Sbjct 8269 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8317 >seq67744 Length=10152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| |||||||| ||| |||||||||||| |||||||||| | Sbjct 68 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 127 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 128 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 187 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| ||| ||| ||| |||||| || | | || || ||| ||||| Sbjct 188 ATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACC 247 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || || | || ||||| || || |||||| Sbjct 248 TCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 295 >seq58370 Length=11695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| |||||||| ||||| || || |||||||| | Sbjct 2613 CCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCTGCA 2554 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || |||| ||||| || ||||| || || | || || || | || Sbjct 2553 AGAGTGCGACCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGA 2494 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||| ||||| | | ||||| ||| ||||| Sbjct 2493 ATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATTGTATCAGAACTCTCAACC 2434 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || || | ||| || || || || |||||| Sbjct 2433 TCCAAGGTGATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCATG 2386 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||| || |||||| ||||||||||||||| || |||| Sbjct 2843 TACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAG 2784 Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | || | || || | || || || ||||| || | | || || || | | Sbjct 2783 -CAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 2725 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | || || |||||| |||||| |||||||| | | || || ||||| Sbjct 2724 GGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCC 2665 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || ||||| || || | ||| || || || || |||||| Sbjct 2664 ACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCATG 2614 >seq62381 Length=5639 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/221 (70%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-- 38162 |||||||| |||||||| ||||||||| || |||||| | ||| | |||| Sbjct 634 CAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCG--CAAGA---GTTCTAC 688 Query 38163 --TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 || || ||||| || || ||||| || || | |||||||| |||| |||||||| Sbjct 689 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGGATGCCTTCTT 748 Query 38221 TGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTA 38279 ||||| | | || || || ||||| | || ||||| | || || || || | || Sbjct 749 TGTCC-TGGGTCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTG 807 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || |||| |||||||||| || ||||| || Sbjct 808 ATGGTCTTCCCGGTCAGAATTTTCACGAAAATTTGCATATT 848 >seq46178 Length=11793 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | ||| || |||| || | || |||||||| || Sbjct 2769 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 2710 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | |||| |||||| ||||| || || ||| ||||| Sbjct 2709 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 2650 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || | || || || || | || || || || ||||| | |||||||||| Sbjct 2649 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 2590 Query 38307 AATATCTGCATGTTT 38321 || |||||||| ||| Sbjct 2589 AAAATCTGCATCTTT 2575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334466230684082