Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq53411 141 1e-28 seq869 89.7 6e-13 seq57180 87.8 2e-12 seq47432 87.8 2e-12 seq52644 86.0 7e-12 >seq53411 Length=6979 Score = 141 bits (156), Expect = 1e-28 Identities = 406/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 |||||| |||||| || | ||||| ||||| || |||||||| || ||| || | Sbjct 3122 GCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 3181 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 ||| || | ||| || || || || ||||||||||| | ||| || || || || || | Sbjct 3182 ACCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGA 3240 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || ||||||||| || || ||||| || || || || ||| | | || | | Sbjct 3241 AGATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGA---GCCGT 3297 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||||| | ||||| | || |||||| | ||||| | || |||| || Sbjct 3298 CGATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCC 3357 Query 93330 TAAATAG--GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || || | || | |||| |||| ||| ||||| || |||| | || || Sbjct 3358 TGAAGAGACGGGATTT--CTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTA 3415 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||| || || |||| ||||| || || || ||||| |||||||| | || |||| Sbjct 3416 CATCTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGA 3475 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || ||| || || | || || | ||||||| || ||| || || ||||| || Sbjct 3476 GACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGC 3535 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 || || || || | | || | || || || ||||| | | || | ||||| Sbjct 3536 GGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCA 3595 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 | | | |||| |||||||| || ||| | ||||| ||||| || || || || Sbjct 3596 GTGGCGCTGGTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTT 3655 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 |||||||| ||||| || || | || ||||| || || ||| || || | ||||| Sbjct 3656 CTTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTT 3715 Query 93688 ATCTTTTAGTAACGGCTCT 93706 | | || | ||||||| Sbjct 3716 GGCCATCAGGAGCGGCTCT 3734 >seq869 Length=4583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 3046 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 3105 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 3106 CGTGGGTTCAAATCCCACTTCTGACA 3131 >seq57180 Length=7767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 316 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 373 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||| || |||||| ||| ||| |||| || | ||||||| Sbjct 374 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTCATTTTTTGT 415 >seq47432 Length=8082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 3814 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 3871 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||||| |||| Sbjct 3872 CGTGGGTTCAAATCCCACTTCTGACAAAATATT 3904 >seq52644 Length=2204 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/107 (79%), Gaps = 10/107 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1564 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1621 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||||| |||| | || |||||| Sbjct 1622 GCGTGGGTTCAAATCCCACTTCTGACAACATTAATTTT---ATTTTT 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556040669335280