Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq76293 100 2e-16 seq58370 95.1 1e-14 seq80270 91.5 1e-13 seq62381 89.7 4e-13 >seq76293 Length=4593 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || ||||||| ||||||||||| ||||| |||| | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || || ||| ||| |||||||||||| ||||| || || Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || | || || | || |||| ||||| || Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || ||||| ||| | ||||| || ||||| Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 336 >seq58370 Length=11695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | |||||||||||||| || ||||| |||| | Sbjct 2615 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 2674 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||| || || ||||| || || Sbjct 2675 GACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 2734 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| || || || | || ||| | || | || || |||||| Sbjct 2735 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 2794 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| | |||||||||||||| Sbjct 2795 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 2841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | ||||| || || || ||| |||| || Sbjct 2387 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAGAGTTCT 2446 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | || || ||| ||| ||||| || ||| |||| || || Sbjct 2447 GATACAATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 2506 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || ||||| | || ||| | ||| | || ||||| || Sbjct 2507 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGATTACAAC 2566 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || || ||||||||||| || ||||||| Sbjct 2567 ATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCA 2615 >seq80270 Length=12149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| || ||||| ||||| ||||| |||| | Sbjct 1277 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 1336 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || || || ||| |||||||||||| ||||| || || Sbjct 1337 AGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 1396 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || | || ||| || || |||| ||||| || Sbjct 1397 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAA 1456 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || || || || || ||||| ||| | ||||| || ||||| Sbjct 1457 CATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 1504 >seq62381 Length=5639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||||||||| || |||| ||||||| || ||||| || | || || | Sbjct 848 AATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 789 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || ||| | | | | | || ||| || | |||||||||||| | || || ||| Sbjct 788 AGTGATACCATCGACAATGTCAAAGCCAAGACCCAGGACAAAGAAGGCATCCCTGTAGAT 729 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || || || | ||| ||||| |||||||||||| || |||| | | || ||| Sbjct 728 CAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGAACTCTTG-CGGTTAC 670 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 || || ||||| || || || || || | |||||| Sbjct 669 AACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422432533332400