Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq69744 113 9e-20 seq63500 91.5 3e-13 seq21080 89.7 1e-12 seq111306 87.8 4e-12 seq99039 87.8 4e-12 seq58365 87.8 4e-12 seq55815 87.8 4e-12 seq27972 87.8 4e-12 seq104116 86.0 1e-11 seq102146 86.0 1e-11 seq95670 86.0 1e-11 seq59269 86.0 1e-11 seq40928 84.2 4e-11 >seq69744 Length=4751 Score = 113 bits (124), Expect = 9e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| | |||||| || | ||||| || || | | || ||| ||||| Sbjct 2920 TGGTTGATGGGTTGAAGCCAGGTCAAAGAAAGATACTATTCTGCTCCTTTAAGAGGAACT 2861 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | | ||| || || || ||||||||||||||||| || || ||| | ||||| Sbjct 2860 TTATAAAGGAAGCAAAAGTTGCACAGTTTTCTGGTTATGTGTCTGAGCATTCCGCCTACC 2801 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||||| ||||| | || | || | || |||||||| || |||||||||| Sbjct 2800 ACCATGGTGAGCAAAGTCTTGCGAGTACTATCATTGGAATGGCACAAGATTATGTGGGCA 2741 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||||||| || || || | || || ||||| ||||| Sbjct 2740 GCAACAACATCAATTTCCTTCAACCAAATGGTCAATTTGG 2701 >seq63500 Length=4804 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2228 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2287 Query 142563 CCCCACATCGGGCAGAAGTC 142582 |||||| |||| |||||| Sbjct 2288 CCCCACGGTGGGC-GAAGTC 2306 >seq21080 Length=516 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 76 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 17 Query 142562 GCCCCAC 142568 ||||||| Sbjct 16 GCCCCAC 10 >seq111306 Length=12415 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10498 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10557 Query 142563 CCCCAC 142568 |||||| Sbjct 10558 CCCCAC 10563 >seq99039 Length=4078 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3866 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3807 Query 142563 CCCCAC 142568 |||||| Sbjct 3806 CCCCAC 3801 >seq58365 Length=5022 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1552 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1611 Query 142563 CCCCAC 142568 |||||| Sbjct 1612 CCCCAC 1617 >seq55815 Length=4020 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 420 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 361 Query 142563 CCCCAC 142568 |||||| Sbjct 360 CCCCAC 355 >seq27972 Length=419 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 348 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 407 Query 142563 CCCCAC 142568 |||||| Sbjct 408 CCCCAC 413 >seq104116 Length=7042 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 990 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 931 Query 142564 CCCAC 142568 ||||| Sbjct 930 CCCAC 926 >seq102146 Length=8691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 4722 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4781 Query 142564 CCCAC 142568 ||||| Sbjct 4782 CCCAC 4786 >seq95670 Length=1490 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1416 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1475 Query 142564 CCCAC 142568 ||||| Sbjct 1476 CCCAC 1480 >seq59269 Length=15336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 12800 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12859 Query 142564 CCCAC 142568 ||||| Sbjct 12860 CCCAC 12864 >seq40928 Length=323 Score = 84.2 bits (92), Expect = 4e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 ||||||||| |||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 318 TAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGG 259 Query 142571 CGGGCAGAAGT 142581 |||| ||||| Sbjct 258 TGGGC-GAAGT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026285183348302