Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq76293 100 2e-16 seq62381 91.5 1e-13 seq67744 89.7 4e-13 seq80270 84.2 2e-11 seq58370 84.2 2e-11 >seq76293 Length=4593 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || ||||||||||| ||||| |||| | | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||| ||| || ||||| || | || | |||| Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || |||||||| || || || || || || | || |||| |||||||| Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || ||||| ||| |||| | ||| |||| || || Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 336 >seq62381 Length=5639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || | |||||| | ||||||||||| |||||||||||||| ||| | ||| Sbjct 752 GACAAAGAAGGCATCCCTGTAGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 693 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| | | || |||||| || || ||||| || |||||||| |||| || Sbjct 692 GATGGTAGAACTCTTG-CGGTTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTG 634 Query 22047 CGTTTACGAGGAGGA 22061 | || | |||||| Sbjct 633 AGGCTAAGGGGAGGA 619 >seq67744 Length=10152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 294 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 235 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| ||| |||||||||||| | || | |||| Sbjct 234 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 175 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || || || ||| || |||| |||||||| Sbjct 174 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 115 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || |||||| | || | ||| |||| || || Sbjct 114 ATTCAAAAGGAGTCCACCCTTCATTTAGTGCTTCGTCTACGTGGTGG 68 >seq80270 Length=12149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 822 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 881 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| || || ||||| ||| | || | |||| Sbjct 882 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 941 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||||||||| || || || || ||| || |||| || |||||| Sbjct 942 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 1001 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||||||||| |||| Sbjct 1002 ATCCAAAAGGAATCTACTCTTCACCTGGT 1030 >seq58370 Length=11695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 2159 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 2218 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| || || ||||| ||| | || | |||| Sbjct 2219 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 2278 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||||||||| || || || || ||| || |||| || |||||| Sbjct 2279 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 2338 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||||||||| |||| Sbjct 2339 ATCCAAAAGGAATCTACTCTTCACCTGGT 2367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357610548678988