Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq53411 257 3e-63 >seq53411 Length=6979 Score = 257 bits (284), Expect = 3e-63 Identities = 505/736 (69%), Gaps = 12/736 (2%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| |||||| |||||||||||||| || || |||||||||||||| Sbjct 3684 AGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGG 3625 Query 42349 AGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTT 42407 || | || || | |||| || ||| |||||| | || | ||| ||| Sbjct 3624 AGGTCGATCTCGAGCAAGACCAGCGCCA-CTGGGAAACCCTAACCCCCGGCGAGAAGCAC 3566 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||| || | || ||||||||||||||||| |||||||| ||| ||||| || Sbjct 3565 TTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTC 3506 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 ||| ||||||||||| ||||| ||| || |||||||| |||||||||||||||| Sbjct 3505 GCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAG 3446 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || || || |||||| | ||||| ||| ||||| | || ||| | || |||||| Sbjct 3445 ATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAA 3386 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 || | | |||| | | || |||| |||| | || || || || ||| || ||| Sbjct 3385 GACTCGGCCGAGAAATCCCGTCTCTTCAGGGCCGTCGACACCATCCCTTGCGTCGCGAAA 3326 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 |||||| | ||||| || || |||||||| | | || | || |||| ||| | | Sbjct 3325 AAGGCGCAGTGGGCCCTGAAATGGATCGA-CGGCTCG--GAGACTTTCGCGGAGCGAATC 3269 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| || ||| || || |||||||||||||| |||| | | || || ||| Sbjct 3268 GTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGG 3209 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || || || | | |||||| || || |||||||||||||| | ||| | || Sbjct 3208 CTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGAT 3149 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887 || || || || | ||||| || ||||| || | ||| || |||| || |||| | Sbjct 3148 GAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC---CCTCCTCCGGATGAAGCTC 3092 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 || ||||||| || | | ||| | | | || || || || |||| ||||||| || Sbjct 3091 ACGGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAGGGAGTTCGTC 3032 Query 42948 ACGCAGTCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 || | ||| | ||||| || | || || |||||| || || ||| | |||||| Sbjct 3031 -TGC-GACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACA 2974 Query 43006 TCCAGTACGTCGCCGA 43021 || ||| |||||| || Sbjct 2973 TCGAGTTCGTCGCTGA 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942948400834720