Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq56214 100 2e-16 seq62381 87.8 1e-12 seq101134 84.2 2e-11 >seq56214 Length=1414 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 668 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 610 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 609 ATAACTGATGTAATGAGCCATTCGCGGTTTC 579 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 668 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 610 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 609 ATAACTGATGTAATGAGCCATTCGCGGTTTC 579 >seq62381 Length=5639 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||||| ||||| || |||||| || ||||||||| | || Sbjct 620 CCTCCCCTTAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACC-GCA 678 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||||||||||||| ||||| ||||| | ||| ||||| || || Sbjct 679 AGAGTTCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGG 738 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 739 ATGCCTTCTTTGTCC 753 >seq101134 Length=8483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| |||||| ||| |||||||| ||||||||||||||||| || Sbjct 8100 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGG 8159 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||| || ||||| ||||| |||||||| ||| || | | ||| Sbjct 8160 CCATCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 8219 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 8220 TTGTCCTGAATCTT 8233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| |||||| ||| |||||||| |||||||||||||||| || Sbjct 8328 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 8387 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||| |||||||| ||||| |||||||| ||| || | | ||| Sbjct 8388 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 8447 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 8448 TTGTCCTGAATCTT 8461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396492236013244