Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq53411 102 2e-16 >seq53411 Length=6979 Score = 102 bits (112), Expect = 2e-16 Identities = 291/439 (66%), Gaps = 14/439 (3%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||| |||| | ||||| ||||| || | || || || || ||| Sbjct 3283 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 3224 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 ||||| || |||||||| || |||| | ||||||| || || | || || Sbjct 3223 TGCGCGATATTTTGGCT----AAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAA 3168 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAA 243463 |||||| ||| || || || ||||| ||| | |||| ||| ||| | || || Sbjct 3167 CGAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGC-CTTCTCTACTCCC 3109 Query 243464 AGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAA-GCAGTTGAA 243522 |||| || ||||| | || || || |||| | | ||| || ||||| Sbjct 3108 TCCTCCGGATGAAGCTCACGGAGGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGAC 3050 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCTGA 243581 | || | ||| ||| | |||||||| | || ||| | |||| |||| |||||| ||| Sbjct 3049 ATAGAGAGGGAGTTCGTCTGCGACGCGTTACCGTGC-GCCTTAGTTGGGATGAACGGTGA 2991 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 || ||||| ||||||||||| ||||| || || | | | ||| | || |||| Sbjct 2990 TCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGG 2931 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||| | ||||||| |||| | |||||||| ||| ||||| ||||| Sbjct 2930 GAAGCTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAA 2871 Query 243702 AACTAACTTCTTCGAAAAG 243720 || || ||||| || ||| Sbjct 2870 GACCAATTTCTTTGAGAAG 2852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101215098555700