Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq53411 131 2e-25 >seq53411 Length=6979 Score = 131 bits (144), Expect = 2e-25 Identities = 345/518 (67%), Gaps = 13/518 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 2837 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 2896 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 125875 ||||||||||||||| | || | || || ||||| | || || Sbjct 2897 CCAATCAAATGGGTTCTGC-ACATCATACAGCTTCCCATATCCCAA-CGCACCCAGCAGC 2954 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 2955 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 3014 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || | |||||| ||| |||| || |||| || || || || | ||||||||| | Sbjct 3015 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 3074 Query 125996 TGAATGGTGTCCACCCC-AGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | | | ||| || || | || | | | | | || || |||| | || Sbjct 3075 TTCACGCGCTCCTCCGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAAG 3131 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || |||||| || || || || ||||| | || ||||||||| ||| || ||||| Sbjct 3132 TCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATC 3191 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || ||||| || | ||| || ||||| || || |||||||||||||| || ||| Sbjct 3192 AGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCC 3251 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTC 126232 || || ||||| || | || ||||| || || | ||| ||| | ||| ||| Sbjct 3252 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGA---GCCGTCGATCCATTTC 3308 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 | |||||||||||||||||| ||| || |||| ||| Sbjct 3309 AGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596473832551760