Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq62381 111 1e-19 seq76293 109 4e-19 seq28101 102 6e-17 seq80270 98.7 7e-16 seq58370 98.7 7e-16 seq57720 89.7 4e-13 seq101134 86.0 4e-12 >seq62381 Length=5639 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| ||||||||| ||| ||| |||| | ||||| ||||| Sbjct 644 TGAAGAGTCGACTCCTTTTGGATGTTGTAACCGCA-AGAGTTCTACCATCTTCCAATTGC 702 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||| || || || ||||| ||||| | ||| Sbjct 703 TTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGGATGCCTTCTTTGTCCTGGGTCTTG 762 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| || | || || || | || ||||| || || ||| Sbjct 763 GCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTC 822 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 ||| |||| || |||||||||||||| Sbjct 823 AGAATTTTCACGAAAATTTGCATATT 848 >seq76293 Length=4593 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| ||| | ||| | ||||| | || Sbjct 540 TGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGC 481 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || ||||| |||| | | ||| ||||| ||||| ||||||||||| ||| ||| Sbjct 480 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTT 421 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 420 GC-TTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 362 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 361 AAGTGTCTTCACAAAGATCTGCAT 338 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 318 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 259 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| ||||| ||||| ||||| ||||| | Sbjct 258 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 199 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | || || || || |||| || || || ||||||||||| Sbjct 198 ATCTTTGCCTTG-ACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 140 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || |||||||||||||| Sbjct 139 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq28101 Length=418 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | ||| | || || | || Sbjct 8 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 67 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| |||| | | ||| ||||| || || || ||||| || ||| ||| Sbjct 68 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 127 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | ||||| || || || ||||| || || ||| Sbjct 128 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCGGTC 187 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||| || |||||| Sbjct 188 AGAGTTTTGACAAAGATCTGCATA 211 >seq80270 Length=12149 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || ||||| ||||||||||| ||| ||| | | | ||||| | || Sbjct 1708 TGAAGGGTTGACTCCTTTTGAATGTTGTAATCTGCT-AGAGTCCGACCATCTTCAAGCTG 1650 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || ||||| |||| | | ||| ||||| ||||| || |||||||| ||| || Sbjct 1649 CTTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 1590 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||| ||| | || || ||||| | | ||||| || ||||| ||||| || || | Sbjct 1589 TGC-TTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 1531 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || ||||| Sbjct 1530 TGAGGGTCTTCACAAAGATCTGCAT 1506 >seq58370 Length=11695 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | ||| | || || | || Sbjct 3045 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 2986 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| |||| | | || ||||| || || || |||||||| ||| || Sbjct 2985 TTTCCAGCAAATATGAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTA 2926 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 2925 GCTTTCACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTC 2866 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | |||||| ||||| ||||||||| Sbjct 2865 AAAGTTTTGACAAAGATTTGCATA 2842 >seq57720 Length=9334 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | | |||| || Sbjct 8046 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 7987 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| | ||| ||||| ||| || |||||||| || Sbjct 7986 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 7927 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || ||||| | || || || || || ||||| || Sbjct 7926 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 7867 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||| ||||| Sbjct 7866 CCTGTCAAAGTCTTCACAAAAATCTGCAT 7838 >seq101134 Length=8483 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||||||||| || || || || ||||||||||| || || | | | || || Sbjct 8109 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAAG-GTGCGGCCATCCTC 8167 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | |||| |||||| ||||| |||||||| |||||||| Sbjct 8168 AAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 8227 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| | || || || || | || || || ||||| ||||| || Sbjct 8228 AATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 8287 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| || |||||| Sbjct 8288 TCCGGTCAAGGTCTTGACAAAGATCTGCATA 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356878800947270