Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq53411 116 5e-21 >seq53411 Length=6979 Score = 116 bits (128), Expect = 5e-21 Identities = 343/519 (66%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || | |||||| ||||| || |||||||| | || || || |||||| Sbjct 2837 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 2896 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC--CCCAATCTGTTTGAGGAGA 127348 ||||||||||||||| | || | || || ||||| | || || Sbjct 2897 CCAATCAAATGGGTTCTGC-ACATCATACAGCTTCCCATATCCCAA-CGCACCCAGCAGC 2954 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 2955 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 3014 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || | |||||| ||| |||| || |||| ||||| || || | ||| ||||| | Sbjct 3015 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 3074 Query 127469 TGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 | | ||| || || | || | | | | | || || ||| || || Sbjct 3075 TTCACGCGCTCCTCCGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAAG 3131 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 3132 TCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATC 3191 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || ||||| || | ||| || ||||| || || || |||||||||||||| ||| Sbjct 3192 AGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCC 3251 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTT 127704 || || ||||| || | | ||||| || |||| | | | || | ||| || Sbjct 3252 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCATTT 3307 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 || |||||||| ||||||||| ||| || |||| ||| Sbjct 3308 CAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612603641933520