Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq53411 161 2e-34 >seq53411 Length=6979 Score = 161 bits (178), Expect = 2e-34 Identities = 547/837 (65%), Gaps = 19/837 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 2851 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 2909 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| ||| | ||| ||||| | |||| | || |||||| ||| || || || || Sbjct 2910 TTCTGCACATCATACAGCTTCCCATATCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 2969 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| || Sbjct 2970 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 3028 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | |||||| |||| || || ||||| ||| | ||| || | || || || | Sbjct 3029 GCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 3087 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| | | | || | | || |||||||| ||||||||||| || | Sbjct 3088 CCGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGGC 3144 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || || ||||| |||||||| || | | | || |||||||| | ||| ||| || Sbjct 3145 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAGCCCGCGCTTTT 3204 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| | | | || |||||||| |||||| || || Sbjct 3205 TTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAG 3263 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 ||||||| | ||| | ||| | | | | | | | |||| | |||||| | Sbjct 3264 GCCACGATTCGCTCCGCGAAA---GTCTCCGAGCCGTCGATCCATTTCAGGGCCCACTGC 3320 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| || |||| ||| || ||| |||||||| | || | | | | ||| | Sbjct 3321 GCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAAGAGACGGGATTTCTCGGCC 3380 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 || ||||| || | | || |||||| || | ||| | || || || Sbjct 3381 GAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATC 3440 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCT 160302 || ||||| ||| |||||| ||||||| ||| ||| ||||||| ||||||| Sbjct 3441 GCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA-CCTGGACCTCCTTCATGAACCT 3499 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| | || | ||||||| ||| || ||||| || | ||||||| Sbjct 3500 TCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGT 3559 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422 |||||| || ||||| | | | || |||||||||| | |||||| | | Sbjct 3560 GATGAAGTGCTTCTCGCCGGGGGTTAG---GGTTTCCCAGTGGCGCTGGTCTTGCTCGAG 3616 Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||| ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 3617 ATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATTTCCCAGAT 3673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793984115300320