Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq80270 100 2e-16 seq76293 95.1 8e-15 seq101134 87.8 1e-12 >seq80270 Length=12149 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||||| ||| || || ||||| || |||| Sbjct 1508 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAAT 1450 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | |||| || | || || || |||| || | | |||||| || | Sbjct 1449 CTGCCAGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTG 1390 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| || || || | | | | |||||||| ||||| Sbjct 1389 GGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTT 1330 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| ||||| || || ||||| || || ||||| ||||| Sbjct 1329 CCACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 1278 >seq76293 Length=4593 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||||| ||| ||||| || || || |||| Sbjct 340 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAAT 282 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | | || || | || || || |||| || | | |||||| || | Sbjct 281 CTGCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTG 222 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| || ||| || | | | | |||||||| ||||| Sbjct 221 GGGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTT 162 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| ||||| || || ||||| || || || || ||||| Sbjct 161 CCACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 110 >seq101134 Length=8483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| || || || || ||||| ||| Sbjct 8091 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 8150 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || |||| || | ||||||||| |||| ||| Sbjct 8151 AAGGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 8210 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | | | || | || | || ||| | ||||||| ||| ||| Sbjct 8211 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTGACATTGTCAATG--GTGTCTGAGCTCTCC 8267 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || || || || || || ||||||||||| Sbjct 8268 ACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346870792668926