Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq71799 129 7e-25 seq53411 104 3e-17 seq65171 100 4e-16 >seq71799 Length=4368 Score = 129 bits (142), Expect = 7e-25 Identities = 312/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || ||||| | | || ||||| || | |||| ||||| || |||| || Sbjct 2246 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 2302 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 2303 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 2360 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | ||| ||| || |||||||| ||||||| || || || Sbjct 2361 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 2419 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| ||| |||||| ||| |||| ||| ||||| || || || || || ||| Sbjct 2420 GCAAGGTGCATTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 2477 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 ||||||||||| || ||||| | | | | | || | || || || ||| || ||| Sbjct 2478 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 2536 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| || || || |||||||| || || ||||| || | || || | Sbjct 2537 ACCAGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAAC 2596 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||| || ||| || | |||||||||| | ||| | || ||||| Sbjct 2597 CCCTTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCAC 2656 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | || | || || | ||||| | || | ||| ||||||| Sbjct 2657 CACTTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 2701 >seq53411 Length=6979 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || |||||| || | || || || || || || || ||||||||||| || |||| Sbjct 3283 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 3224 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || || ||||| ||||| |||||| |||||| Sbjct 3223 TGCGCGATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAG 3164 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 3163 TTGATCTCGCGAGATGAAGGCCTCCAC 3137 >seq65171 Length=12567 Score = 100 bits (110), Expect = 4e-16 Identities = 273/412 (66%), Gaps = 12/412 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 756 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 813 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || || ||||||||||||||||| || || ||| Sbjct 814 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 873 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| | || ||||| | |||| ||| || | || ||||| Sbjct 874 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCC--TCACTCTGGACGCTCCCAC 929 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 || ||||||| ||||||||| | | |||| ||| || ||| || || || Sbjct 930 TCCCACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTC 989 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| |||| || || || || || ||||| || ||||| || ||| | || || Sbjct 990 ACCAGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACA 1049 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| |||||||| || || || ||| | ||||| | ||| | |||||||| Sbjct 1050 CCCTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCAC 1109 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 || ||| | ||| || ||||| |||| || | ||||||| |||| Sbjct 1110 AACCTCCTGCAACTCCAGCTTGGCCTGGTCAGCTCCGGCGACATCGGAAAAC 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619828186111840