Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq71799 114 2e-20 seq65171 102 1e-16 seq53411 93.3 5e-14 >seq71799 Length=4368 Score = 114 bits (126), Expect = 2e-20 Identities = 230/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 2246 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 2305 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 2306 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 2362 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | ||| ||| || |||||||| ||||||| || ||||| || Sbjct 2363 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 2422 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| |||||| || | | ||| ||||| || || | || || |||||||| Sbjct 2423 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 2482 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | | | | | || | || || || ||| || |||||| | Sbjct 2483 AAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 2541 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || || |||||||| || || ||||| Sbjct 2542 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 2578 >seq65171 Length=12567 Score = 102 bits (112), Expect = 1e-16 Identities = 273/410 (67%), Gaps = 8/410 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 756 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 813 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | ||| | || || ||||||||||||||||| || ||||| Sbjct 814 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 873 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 874 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTGGACGCTCCCACTCC 932 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||||||| | | |||| ||| || ||| || || ||||| Sbjct 933 CACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTCACC 992 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 |||| || || || || || ||||| || ||||| || ||| | || | | |||| Sbjct 993 AGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCA-GACACC 1051 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | |||||||| || || || ||| | ||||| | ||| | |||||||||| Sbjct 1052 CTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCACAA 1111 Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 9686 ||| | ||| || ||||| |||| || | ||||||| |||| Sbjct 1112 CCTCCTGCAACTCCAGCTTGGCCTGGTCAGCTCCGGCGACATCGGAAAAC 1161 >seq53411 Length=6979 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || | || || |||||| || || ||||| || || Sbjct 3137 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAGCCC 3196 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || |||||||| || ||||||||||| || ||||| || Sbjct 3197 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCA 3256 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | | ||||| ||||| | |||| | ||| | |||||||| Sbjct 3257 GGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCATTTCAGG 3311 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||| ||| Sbjct 3312 GCCCACTGCGCCTTTTTC 3329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589111891027280