Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq70199 114 1e-20 seq112910 93.3 5e-14 >seq70199 Length=6631 Score = 114 bits (126), Expect = 1e-20 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||| || ||| ||| ||||||||| | || ||||| Sbjct 1823 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCAATGGGG 1764 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| ||||| | || ||| | | |||| ||||| | ||| ||| Sbjct 1763 TATGGAGGTCCTCATGCAGCATTTCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCT 1704 Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 || |||||| | | || ||| || ||| | || || ||| | | || Sbjct 1703 GGAAGAATTATTGGTGTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCA 1646 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||| |||| Sbjct 1645 TGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGCTACCAGCAACATTTGCACTGCTC 1586 Query 153970 AGGCAC 153975 ||| || Sbjct 1585 AGGTAC 1580 >seq112910 Length=6904 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| | |||| ||||| |||||||| || || || ||||| || || ||||| ||| Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 170119 GGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTA 170178 || || | |||||| | |||||| || ||||| || | | ||||||||||| || Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 170179 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATG 170217 || | || ||||| ||| || | ||||| ||| || || Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTG 4374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578359749868480