Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq80270 118 8e-22 seq57720 111 1e-19 seq101134 105 5e-18 seq2078 102 6e-17 seq87988 98.7 8e-16 seq58370 96.9 3e-15 seq66408 95.1 9e-15 seq115991 89.7 4e-13 seq102053 82.4 6e-11 >seq80270 Length=12149 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| |||||||| | |||| | ||| | || || | ||||||||| ||||| Sbjct 1697 CTCCTTTTGAATGTTGTAATCTGCTAGAGTCCGACCATCTTCAAGCTGCTTACCAGCAAA 1638 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||| || | ||| || |||| |||| |||||||||||| ||||||| ||| ||| Sbjct 1637 TATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 1578 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| || || || ||||| || | || || || Sbjct 1577 ATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGTCTTCAC 1518 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 1517 AAAGATCTGCATC 1505 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| ||||| || | ||| ||| |||| |||||||| ||||| ||||| Sbjct 1240 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 1181 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||||| ||||||||||| |||||| ||| ||| Sbjct 1180 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTG 1121 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||||| || || || || || |||| || || ||| Sbjct 1120 TCAATTGTATCAGAGCTTTCCACCTCCAATGTGATTGTCTTCCCAGTCAGGGTCTTCACA 1061 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 1060 AAGATTTGCAT 1050 >seq57720 Length=9334 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| ||||| | || || | ||||| || || ||| ||| || ||||| |||||||| Sbjct 8068 GTCACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC 8009 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654 || || | ||| |||| || | |||||| |||||||| |||| | ||| || |||| Sbjct 8008 AGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGG 7949 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || ||||| || ||||| ||| ||| | | | | || || || Sbjct 7948 TGGGATC-CCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCT 7890 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | ||||||| || || || || || |||||||| || ||||||||||||||| Sbjct 7889 CAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCATC 7837 >seq101134 Length=8483 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || |||||||| | | | || Sbjct 8100 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGG 8159 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || |||| ||||| |||||| Sbjct 8160 CCATCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 8219 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | ||||| ||||||||||| || Sbjct 8220 TTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTG 8279 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 8280 ATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || ||||| || | || | || Sbjct 7872 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGG 7931 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| || || | ||| || || | || | |||||| Sbjct 7932 CCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCC 7991 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | ||||| ||||||||||| || Sbjct 7992 TTGTCCTGGATCTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTG 8051 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 8052 ATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 8089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || |||||||| | || | || Sbjct 8328 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 8387 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| ||||| ||||| || |||| ||||| |||||| Sbjct 8388 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 8447 Query 48669 TTGTCGCTAATCTT 48682 ||||| |||||| Sbjct 8448 TTGTCCTGAATCTT 8461 >seq2078 Length=2300 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || ||||||||||||| || |||| Sbjct 1927 AGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGG 1868 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || |||| ||||| |||||| Sbjct 1867 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCC 1808 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||||||||| | || Sbjct 1807 TTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTG 1748 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || ||||| |||||| Sbjct 1747 ATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 1709 >seq87988 Length=3988 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || |||||| | || || || ||||||||| ||||| ||||| | Sbjct 1613 CCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTGCA 1672 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||||||||| ||||| ||||||| ||| ||||| | || Sbjct 1673 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAGGG 1732 Query 48660 ACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 1733 ATGCCTTCCTTGTC 1746 >seq58370 Length=11695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||| | ||| | | | || || | |||| Sbjct 3045 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 2986 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || |||||||| || | || || |||| || | |||||||||||| |||||| Sbjct 2985 TTTCCAGCAAATATGAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTA 2926 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | ||||| ||| ||||||| || || || ||||| ||| Sbjct 2925 GCTTTCACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTC 2866 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 |||||||| ||||| || ||||| Sbjct 2865 AAAGTTTTGACAAAGATTTGCAT 2843 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || || || || |||||||| | ||| | ||| Sbjct 2604 AGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGA 2545 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| || || | ||| || || | |||| ||||||| Sbjct 2544 CCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCC 2485 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || || ||| ||||||| || Sbjct 2484 TTGTCCTGAATCTTTGCCTTGACATTGTCAATTGTATCAGAACTCTCAACCTCCAAGGTG 2425 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || ||||| || ||||| Sbjct 2424 ATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 2387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| ||||||||||| || |||| || | | Sbjct 2832 AGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTT 2773 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| | ||| || || | ||||| |||||| Sbjct 2772 CCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 2713 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | | || || ||||| |||| || Sbjct 2712 TTGTCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTG 2653 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || ||||| || ||||| Sbjct 2652 ATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 2615 >seq66408 Length=4853 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||| ||||| ||||| |||| || | || | || || Sbjct 659 ACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGTGTACGCCCATCCTCG 718 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| | ||||| |||| ||||| ||||||||||| Sbjct 719 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 778 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || || ||||| | || || || || Sbjct 779 ATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTG 838 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| ||||||||| Sbjct 839 CCTGTGAGGGTTTTCACAAAGATCTGCATC 868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| ||||| || | ||| ||| |||| |||||||| ||||| ||||| Sbjct 221 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 280 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||||| ||||||||||| |||||| || ||| Sbjct 281 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTG 340 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||||| || || || || || || | || |||||| Sbjct 341 TCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACA 400 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 401 AAGATCTGCAT 411 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||||||||||| || | || | || || | ||| || ||||||||| Sbjct 449 TCCTTTTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAT 508 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||| | |||||||||||| |||||| || ||| | Sbjct 509 ATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 568 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | || || || || || || | ||| || ||| Sbjct 569 TCGATCGTATCAGAACTCTCAACCTCTAATGTGATGGTCTTCCCTGTGAGAGTCTTAACA 628 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 629 AAGATCTGCAT 639 >seq115991 Length=9835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||| ||||| | | | | ||| | || ||||||||||| |||||||| Sbjct 6438 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCAAA 6379 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||||||| || | |||||||| || |||||| ||| ||| Sbjct 6378 GATCAACC-----TGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGCTTTGACATT 6324 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || || || || || ||||||| || || Sbjct 6323 GTCAATGGTATCAGAGCTCTCCACCTCCATAGTGATGGTCTTGCCAGTCAAAGACTTCAC 6264 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 6263 AAAAATCTGCAT 6252 >seq102053 Length=8183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 4324 CGCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 4383 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | ||| || ||||| || || || ||||| || |||| | Sbjct 4384 CGAGTGTGCGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 4443 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || | ||||| Sbjct 4444 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCA 4503 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || ||||| || ||||| | ||||| || || ||||||||| || Sbjct 4504 CCTCCAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 4556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380390590510506