Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq53411 178 2e-39 >seq53411 Length=6979 Score = 178 bits (196), Expect = 2e-39 Identities = 565/865 (65%), Gaps = 26/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 2834 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 2892 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCC 47953 |||| | || ||||| | | ||||| ||| | || ||| | || Sbjct 2893 CCATCCAATCAAATGGGTTCTGCACATCATACAGCTTCCCATATC----CCAACGCACCC 2948 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-T 48012 ||||| ||| |||||| |||||||||| | ||| || |||||| || | | Sbjct 2949 AGCAGCCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACT 3008 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||||| || || | || |||||| ||||||| | || || | || ||| Sbjct 3009 AAGGCGCACGGT-AACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCAC 3067 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | || | || ||| | || ||||| | ||| Sbjct 3068 GATTGACTTCACGCGCTCCTCCGTGAGCTTCATCCGGAGGAG---GGAGTAGAGAAGGCA 3124 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | |||||| || || ||| | | |||| |||||| ||||| Sbjct 3125 CGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACC 3184 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||| ||||| || || || ||| || ||||||||||| Sbjct 3185 CGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGAT 3244 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || ||||| ||||| || || | ||| |||||| | ||| ||| Sbjct 3245 CCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC---GAT 3301 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||| | ||||| ||| || ||| || || || || | ||||| ||| Sbjct 3302 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAA 3361 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 ||| ||| | | ||| | ||||| ||| || ||||||||| Sbjct 3362 GAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 3421 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | ||||| Sbjct 3422 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 3481 Query 48493 CACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || | ||| || ||| || |||||||| ||| || || || || || || | Sbjct 3482 GACCTCCTTCATGAACCT-TCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGA 3540 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA---GC 48608 ||||||| ||||| || | | ||| || |||| | |||| || | | ||| || Sbjct 3541 AGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGC 3600 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 ||| ||||| | || || || || || | |||||||| ||||| || || | Sbjct 3601 GCTG---GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCT 3657 Query 48669 TGTACATGCCCCATATGTCCGGATA 48693 ||||||| |||| || ||||| || Sbjct 3658 TGTACATTTCCCAGATCTCCGGGTA 3682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930160861780480