Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq53411 147 4e-30 >seq53411 Length=6979 Score = 147 bits (162), Expect = 4e-30 Identities = 381/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | || |||||||||||| ||| | ||| Sbjct 3676 GAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGAT 3617 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| | | |||| | | ||| || | |||| |||| || ||| Sbjct 3616 CTCGAGCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACT 3557 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||| || || Sbjct 3556 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGAAGG 3497 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| | ||||| | ||| |||||||| |||||||| || || Sbjct 3496 TTCATGAAGGAGGTCCAGGTCTCGGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGAT 3438 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| |||| | || || ||| ||||| | |||| || Sbjct 3437 TGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGC 3378 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| | || || || | ||| |||| ||| || || || || ||||||| Sbjct 3377 CGAGAAATCCCGTCTCTTCAGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCA 3318 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| |||| |||||| || || | ||| || || | ||||| | || |||| Sbjct 3317 GTGGGCCCTGAAATGGATCGACGGCTCGGAG----ACTTTCGCGGAGCGAATCGTGGCCT 3262 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 | | |||| ||||| || ||||| ||| | | | | ||| || || || ||||| || Sbjct 3261 TCGCCTGC-GTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGC-GCGATATTTTGGCTAAA 3204 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || ||| ||||| || ||| ||| || |||||| | ||| | || || || Sbjct 3203 AAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 3144 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || ||||| |||||| Sbjct 3143 CCTCCACTGCGACTTCGCGTGCCTTCTCTAC 3113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927476820599680