Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq112910 136 5e-27 seq68602 105 9e-18 >seq112910 Length=6904 Score = 136 bits (150), Expect = 5e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 |||||||||||||| || || || ||||| ||||| | ||||||||| || ||||| || Sbjct 4370 GCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 4311 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 ||||| || |||||||| ||||||||| || || || || ||||| || || ||||| Sbjct 4310 TTGTTAAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 4251 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACC 27059 || ||||| ||||| |||||| |||| | ||||| Sbjct 4250 TTATAGGTTTCTTCCTCTTGATCGAATCTGTAACC 4216 >seq68602 Length=1998 Score = 105 bits (116), Expect = 9e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 ||||||| |||||||||| | ||||| || ||||||||||| ||||| || | ||| Sbjct 496 GTTTCAAGAGTAACATCAGAGGAAGGATAGGCGACACAAGTGAGGACAAAGCCACCATCA 555 Query 32693 ATTTGATCATCATCCAAGAACG-ACTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751 || || ||||||| |||||| | ||| ||| ||||| || || ||| |||| ||| Sbjct 556 ATCTGGTCATCAT-CAAGAAAGCTCTGGTCAGACTGGTCGACGGTGCCATCAACAACCTT 614 Query 32752 ACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTC 32811 || || || || || |||| ||| || ||||| ||||| | || | || | || Sbjct 615 GCCGGCGCAGGAAGAGCAGGAACCGGCGCGACAGGAGTAAGGGAGGTCGAGACCGGCCTC 674 Query 32812 CTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 ||| || || || || ||||| |||||||| Sbjct 675 CTCGGCGGCGTCGAGAATGTAGACATCATCAG 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664514276485040