Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq71799 95.1 1e-14 seq53411 93.3 5e-14 seq65171 87.8 2e-12 >seq71799 Length=4368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 226/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| || || Sbjct 2578 CCAGGAACTGGAAAGACTCTGCTAGCGAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTT 2519 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | || Sbjct 2518 TTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 2459 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | || |||||| ||| || ||||| || ||||||| ||| Sbjct 2458 CGTGATCTTTTTAAGAAGGCTAAGGAAAATGCACCTTGCATTGTATTTGTTGATGAAATT 2399 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| | | |||| |||| || ||||| || |||||| Sbjct 2398 GATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGT---GGAGGCAATGATGAAAGAGAA 2342 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATT 175608 || || ||||||| || | || || |||||||| ||||| | | ||||| |||| Sbjct 2341 CAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATT 2282 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||| |||| || ||||| | | ||||| || ||| Sbjct 2281 GTGG---TTGCAGCAACTAACAGGGCAGATATTCTCGAT 2246 >seq53411 Length=6979 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079 ||| |||||| | ||||| |||||||| | ||| | |||| | ||||| ||| Sbjct 3329 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCGGAGACTTTCGCGGAG 3275 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || | | || || || || ||||| || ||||||||||| || |||||||| || Sbjct 3274 CGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATA 3215 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | || ||||| || || ||||| || || |||||| || || | || || Sbjct 3214 TTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCG 3155 Query 65200 CGAGATGAGGGTCTCCAC 65217 |||||||| || |||||| Sbjct 3154 CGAGATGAAGGCCTCCAC 3137 >seq65171 Length=12567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC---CCA 175371 || ||||| ||||||||||| || || || || | || ||||| | || | || Sbjct 1031 CCCGGTACCGGAAAGACCCTGCTGGCGCGTGCGGTTGCTGGTGAGGC---TGGCACGCCG 975 Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 ||| || ||| | || | | ||||||||| ||||||| || ||||| || || Sbjct 974 TTCTTCTCGTGTGCCGCGTCGGAGTTTGTGGAGCTGTTTGTGGGAGTGGGAGCGTCCAGA 915 Query 175432 GTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 || | || | ||||| | ||| | ||| | || || ||||| || |||||||| Sbjct 914 GTGAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGCGCCC-TGCATTGTGTTTATTGATGA 856 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 |||||||||||| || | ||| | | || || ||| | | | |||||| ||||| Sbjct 855 GATTGATGCGGTTGGGAGGCAGAGAGGGGCGGGGATGGGAGG--TGGAAATGATGAGAGG 798 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || |||||||| || | || |||||||| || ||| Sbjct 797 GAGCAGACTATTAATCAGTTATTGACGGAGATGGACGGGTTT 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595690987207360