Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq58370 102 1e-16 seq115991 84.2 4e-11 seq28101 84.2 4e-11 >seq58370 Length=11695 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || ||||| |||| |||| || | ||| || ||||||| Sbjct 2850 ATTTGCATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTA 2791 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | || || || |||||||| || ||||| || Sbjct 2790 TAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGG 2731 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || ||||| | ||| | ||| ||| || || || Sbjct 2730 TCTGGGGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAG 2671 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | ||| || ||||| || || || || || ||||| |||||||| Sbjct 2670 CTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 2615 >seq115991 Length=9835 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || || |||| |||| |||||| |||||||| |||| || || | | ||| || Sbjct 6455 ACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCC 6396 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || ||||||||||| || || | ||||| || || || || || |||||||| Sbjct 6395 AACTGCTTTCCGGCAAAGATCAACC-----TGATCCGGCGGGATACCCTCCTTATCTTGA 6341 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | ||| ||| ||||| || ||| || || | ||| || || || Sbjct 6340 ATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCCATAGTGATGGTCTTG 6281 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | | || ||||| || ||||| Sbjct 6280 CCAGTCAAAGACTTCACAAAAATCTGCAT 6252 >seq28101 Length=418 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || |||||||||||| Sbjct 209 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 268 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || ||||| || || || Sbjct 269 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 328 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || ||||| | ||| | ||| ||| || || || || Sbjct 329 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCC 388 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||| | ||| || ||||| || || || Sbjct 389 ACTTCCAAAGTGATGGTTTTGCCGGTAAG 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898329411491040