Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq58370 105 1e-17 seq76293 104 3e-17 seq80270 102 1e-16 seq47958 98.7 1e-15 seq28101 96.9 5e-15 seq67744 95.1 2e-14 seq87988 86.0 9e-12 seq2078 86.0 9e-12 >seq58370 Length=11695 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 2843 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 2902 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || || || || ||||| ||||| || || Sbjct 2903 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 2962 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||||||||| ||| || ||| | ||||||| || Sbjct 2963 CAAAGGCTCATATTTGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3022 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 3023 ATTCAGAAGGAGTCCACCCTTCA 3045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 2615 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 2674 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| |||||| || || || || || || || ||||| || Sbjct 2675 GACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 2734 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | | || |||||| Sbjct 2735 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 2794 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 2795 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 2824 >seq76293 Length=4593 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | |||||||| || || || || || || || |||| Sbjct 338 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 397 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || |||||||| |||||||| || Sbjct 398 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 457 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| || ||| | | ||||| || Sbjct 458 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAAC 517 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| |||| ||||| Sbjct 518 AT-TCAAAAGGAGTCGACCCTTCA 540 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||| ||||| || ||||| ||| || Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || || || ||||||||||| || ||||| || Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 228 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || || ||| || | ||||||| || Sbjct 229 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 288 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||| || ||||| ||| Sbjct 289 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 319 >seq80270 Length=12149 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 1277 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 1336 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || || || ||||||||||| || ||||| || Sbjct 1337 AGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 1396 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || ||||||||||| ||| || || | ||||||| || Sbjct 1397 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAA 1456 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 1457 CATACAGAAGGAGTCAACTCTGCATTTGGTG 1487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || |||| Sbjct 1506 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 1565 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||||| ||||| || || Sbjct 1566 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 1625 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| | ||| || ||||||| || Sbjct 1626 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGTCGGACTCTAGCAGATTACAAC 1685 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| | || ||||| Sbjct 1686 AT-TCAAAAGGAGTCAACCCTTCA 1708 >seq47958 Length=6020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 5654 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 5595 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 5594 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 5537 Query 156031 TGTTAAG 156037 | ||||| Sbjct 5536 TTTTAAG 5530 >seq28101 Length=418 Score = 96.9 bits (106), Expect = 5e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || || ||||| || || || ||||| ||| ||||| | ||| || |||||| | Sbjct 414 ACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCTGACACCATTGATAATGTGAAAGCT 355 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| || ||||| || || || || ||||| || || || ||||||| ||| |||||| Sbjct 354 AAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCAGGTAAG 295 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 ||||| || ||| || || | |||| |||||||| || ||| ||| | || || || Sbjct 294 CAGCTTGAGGATGGAAGGACACTTGCAGACTATAATAT-TCAAAAGGAGTCCACTCTGCA 236 Query 156026 TTTAGTG 156032 || ||| Sbjct 235 CTTGGTG 229 >seq67744 Length=10152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || || || || |||| Sbjct 294 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 235 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || |||||||| || || || ||||| || Sbjct 234 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 175 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | | || | | ||||| || Sbjct 174 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 115 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTG 156032 || || |||| || | || |||||||||||| Sbjct 114 AT-TCAAAAGGAGTCCACCCTTCATTTAGTG 85 Score = 89.7 bits (98), Expect = 8e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || ||| ||| Sbjct 522 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 463 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 462 GACACCATTGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 403 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGA 155974 |||||| |||||| ||| || ||||||||||| Sbjct 402 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGA 371 >seq87988 Length=3988 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || || || |||||||| |||||||| || || ||| |||||| ||| ||||||||| | Sbjct 1749 CAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 1690 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| |||| | ||||||||||||| |||||| | || || || | ||| Sbjct 1689 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 1630 Query 156033 TTAAGATTAAGAGGCGG 156049 || || || || || || Sbjct 1629 TTGAGGTTGAGGGGAGG 1613 >seq2078 Length=2300 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || ||||| | || ||||| ||| Sbjct 1938 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACCCTTGAGGTCGAGAGCTCT 1997 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| || || || || Sbjct 1998 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 2057 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| || ||| | | || || |||| || ||| Sbjct 2058 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCAGACTACAAT 2117 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || ||||| ||| Sbjct 2118 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730794117215200